BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906880
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20635.1 | Symbols: | ATP binding;protein kinases;protein s... 1598 0.0
> AT2G20635.1 | Symbols: | ATP binding;protein kinases;protein
serine/threonine kinases | chr2:8900410-8903384 FORWARD LENGTH=1578
Length=1578
Score = 1598 bits (865), Expect = 0.0
Identities = 983/1036 (95%), Gaps = 23/1036 (2%)
Strand=Plus/Plus
Query 469 GGGTACCATGCAAGCAACAAAGTTTTCCCTGGAAAAGCCAACCTGTCATCTTTGCAGAAT 528
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 565 GGGTACCATGTAAGCAACAAAGTTTTCCCTGGAAAGGCCAACCTGTCATCTTTGCAGAAT 624
Query 529 TATTCCAGAAATAAGATCATTGACATAGGTGGAAGAAAGTACCAGATGAAGGGCTGTGCT 588
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 625 TATTCCAGAAATAAGATCATTGAGATAGGTGGAAGAAAGTACCAGATGAAGGGCTGTGCT 684
Query 589 GGCCAAGGTGGTTTTGCTCAAGTGTTCAAAGCATACATTGACAGCAATCCTGATGAAGTA 648
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 685 GGCCAAGGTGGTTTTGCTCAAGTGTTCAAAGCATTCATTGACAGCAATCCTGATGAAGTA 744
Query 649 GTTGCTCTAAAGGTACAAAAGCCACCTTTTCCTTGGGAATTCCACATGTATCGCCAACTT 708
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 745 GTTGCTCTAAAGGTACAAAAACCACCTTTTCCTTGGGAATTCCACATGTATCGCCAACTT 804
Query 709 GATTGCAGGATCCCAGAGAGCCAAAGATCAAGTTTTGGATTGGCTCAGAGAGTGCACGTG 768
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GATTGCAGGATCCCAGATAGCCAAAGATCAAGTTTTGGATTGGCTCAGAGAGTGCACGTG 864
Query 769 TATTCAGACTACAGTATACTTGTCTGCGATTATCTATCACATGGGACACTCCAGGACGTC 828
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 865 TATTCAGACTACAGTATACTTGTCTGCGATTATTTATCACACGGGACACTCCAGGACGTC 924
Query 829 ATAAACTCGTATGTCGTTGTTGGCAAGTCCATGGAAGAAGTTTTGTGCATGTATTACACA 888
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 925 ATAAACTCGTATGTCGTTGTTGGAAAGTCCATGGAAGAAGTTTTGTGCATGTATTACACA 984
Query 889 ATAGAAATGCTGTACATGCTGGAAACTTTGCACAGTGTTGGAATCATTCATGGTGATTTC 948
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 985 ATAGAAATGCTGAACATGCTGGAGACTTTGCACAGTGTTGGAATCATTCATGGTGATTTC 1044
Query 949 AAGCCAGACAATCTGCTGATCCGATACCCTCCAGAAAACCTAACTGAGACAGGCTTTCAT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 AAGCCAGACAATCTGCTGATCCGATACCCTCCAGAAAACCTAACTGAGACAGGCTTTCAT 1104
Query 1009 GATAAAACAGGTTCTTGGAGCAATCAGGGTCTCTGTCTTGTTGACTGGGGTAGAGGAATA 1068
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1105 GAGAAAACAGGTTCTTGGAGCAAGAAGGGTCTCTGTCTTGTTGACTGGGGTAGAGGAATA 1164
Query 1069 GACTTGAGCCTGTTTCCTAGAACCACCGAGTTTACAGGAGATTGTCGTACCTCAGGCTTC 1128
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GACTTGAGCTTGTTTCCTAGAACCACCGAGTTTACAGGAGATTGTCGTACCTCAGGCTTC 1224
Query 1129 CGTTGCATGGAGATGAAAGAAAAGAAACCTTGGAAGTTTCAGGCAAGTCTTTTAATTCAC 1188
|||||| |||||||||| || | ||||||||||||||||||| |
Sbjct 1225 CGTTGCGTGGAGATGAAGGAGGATAAACCTTGGAAGTTTCAGG----T------------ 1268
Query 1189 ACTGTGGACACTTATGGACTATGTGTAATCGTCCACATGATGCTGCACAAC-TGCTACAT 1247
| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1269 ---G-G-ACACTTATGGACTATGTGTAATCGTCCACATGATGCTGCACAACGT-CTACAT 1322
Query 1248 GGAGATCGAGAAGAAACAATCTCTGGACGGTGGCCACATTAATATGCCGAGAACTTCATT 1307
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1323 GGAGATCGAGAAGAAGCAATCTCTGGACGGTGGCTACATTAATATGCCGAGAACTTCATT 1382
Query 1308 TAGAAGATACTGGAACGTGGATCTGTGGAAGGAACTATTCACGAAGCTGCTCAACAGAGA 1367
|| |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1383 TAAAAGATACTGGAAGGTGGATCTGTGGAAAGAACTGTTCACGAAGCTGCTCAACAGAGA 1442
Query 1368 GACGTGTGAAGATGACACAGAGACACTAAGGAATCTGAGAAAGTCAATGGAAGAGTATAT 1427
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1443 AACGTGTGAAGATGACACAGAGACACTGAGGAATCTGAGAAAGTCAATGGAAGAGTATAT 1502
Query 1428 ATGCTCCGATCCTAAGCTCATGAAGAAGCTTAACGAGTTACTCGCCAAACAACGCATCTC 1487
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ATGCTCTGATCCTAAGCTCATGAAGAAGCTTAACGAGTTACTCGCCAAACAACGCATCTC 1562
Query 1488 TTTATGCTCTTCGTAA 1503
|||||||||||||||
Sbjct 1563 GTTATGCTCTTCGTAA 1578
Score = 660 bits (357), Expect = 0.0
Identities = 406/430 (94%), Gaps = 2/430 (0%)
Strand=Plus/Plus
Query 41 CCGCCGGAGACCCGCTCTTCCCGTGGCTTATGAAGATTAAAAATTCGATGGAGGATCTAT 100
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 23 CCGCCGGAGACCCGCTCTTCCCGTGGCTTATGGAGATTAAAAATTCGATGGAGGATCTAT 82
Query 101 ACTCTGGTAAAAATTCCGGCGAAGATCTCGATAAGCTTCTCTATGATTGTATCTCAACTT 160
|| |||||||||||||||| | ||||||||||||||||| | |||||||||||||||||
Sbjct 83 ACGCTGGTAAAAATTCCGGATACGATCTCGATAAGCTTCTATTTGATTGTATCTCAACTT 142
Query 161 ATAAGGAAGATACTCGGTACCGAAATGACCTCAGATTCCTCAAGATCTGGTTTCTTTACC 220
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 143 ATAAGAAAGATTCTCGGTACCGAAATGACCTCAGATTCCTCAAGATCTGGTTTCTCTATC 202
Query 221 TTG-AGAGCTGTGAAGATTTTGAGAGGGTTTATAGAGAAGTTGAAGAGAATGAGATATGT 279
||| || || | ||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 203 TTGAAG-GCAGGGAAGATTTTGAGAGGGTTTATAGAGAAATTGAAGAGACTGAGATATGT 261
Query 280 ATAGGGCATTCTTTGCTCTATGAATGGTATGCTATTTTTCTTGAGGTCAAAGGATTATGG 339
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 262 AAAGGGCATTCGTTGCTCTATGAATGGTATGCTATTTTTCTTGAGGTCAAAGGATTGTGG 321
Query 340 CGAAGAGCAAATTCGGTTTATCAGACTGGTCTTTCAAGGAAAGCTGAACCATTTGACAGG 399
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CGAAGAGCAAATTCTGTTTATCAGACTGGTCTTTCAAGGAAAGCTGAACCATTTGACAGG 381
Query 400 TTAAAAGAGGCTCACTCGTTGTTCTTACAAAGAATCTCTAAGAGGACCAAAACATCTTCC 459
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 382 TTAAAAGAGGCTCACTCATTGTTCTTACAAAGAATCTCTAAGAGGACCAAAGCATCTTCC 441
Query 460 CTTGAAGAGG 469
|||||| |||
Sbjct 442 CTTGAAAAGG 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5