BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906882

Length=2157
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G19810.1 | Symbols:  | pseudogene, putative cell division co...   272    9e-72
  AT2G37910.1 | Symbols:  | cation/hydrogen exchanger, putative (...  97.1    6e-19


> AT1G19810.1 | Symbols:  | pseudogene, putative cell division 
control protein, blastp match of 53% identity and 2.2e-113 P-value 
to GP|6069665|dbj|BAA85441.1||AP000616 EST D15969(C1695) 
corresponds to a region of the predicted gene.~similar to 
valosin-containing protein (U20213) {Oryza sativa (japonica 
cultivar-group)} | chr1:6848382-6849988 REVERSE LENGTH=1607
Length=1607

 Score =  272 bits (147),  Expect = 9e-72
 Identities = 266/321 (83%), Gaps = 17/321 (5%)
 Strand=Plus/Plus

Query  534  GAAACCTATTTCTGGGTTTTTACTTCATGGTCCACCTGGTTGTGGCAAGTCTACACTAGC  593
            ||| || ||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct  129  GAAGCCAATTTCTGGGATTTTACTTCATGGTCCACCTGGTTGTGGCAAGTCTACATTGGC  188

Query  594  T--TG--TGCCATCGCCAACGAAACTGGCGTGCCCTTTT-ATATGATTTCCGCTGCTGAA  648
            |  ||  |||||| || || |||||||| || || |||| ||||||| || ||| |||| 
Sbjct  189  TCGTGCATGCCATTGCTAATGAAACTGGTGTTCC-TTTTCATATGATCTCTGCTTCTGAG  247

Query  649  -TTGGTTTCTGGTGTTTCCGGTGAATCTGAAGAGAATATCAGGGAACTCTTCTTTAAAGC  707
             ||| ||||||||||||| |||||||||||||||||||| ||  ||||||||| ||||||
Sbjct  248  GTTG-TTTCTGGTGTTTCGGGTGAATCTGAAGAGAATATAAGAAAACTCTTCTCTAAAGC  306

Query  708  TTATAGGACTGCACCCTCCATTATATTTATTGATGAGATTGACGCAATTGCATCAAAGAG  767
             ||||| ||||| || || ||||| ||||| ||||||||||| || ||||| ||||||||
Sbjct  307  GTATAGAACTGCTCCTTCGATTATCTTTATCGATGAGATTGAGGCGATTGCGTCAAAGAG  366

Query  768  GGAGAATCAGCAG-AAA-GG-TATGGATACACGTATC-TTGACTCAGTT-ACTGAGTTGT  822
            ||| ||||| ||| ||| || |||||| || |||||  || || ||||| | ||| ||||
Sbjct  367  GGATAATCATCAGCAAAAGGGTATGGAGACTCGTATTGTT-ACACAGTTGA-TGAATTGT  424

Query  823  ATGGATGA-GAAGTATATGCT  842
            |||||  | || |||||||||
Sbjct  425  ATGGACCAAGA-GTATATGCT  444


> AT2G37910.1 | Symbols:  | cation/hydrogen exchanger, putative 
(CHX21) | chr2:15868399-15869097 FORWARD LENGTH=699
Length=699

 Score = 97.1 bits (52),  Expect = 6e-19
 Identities = 68/75 (91%), Gaps = 3/75 (4%)
 Strand=Plus/Plus

Query  383  CTAGTGAAGAGGCAAGTAAGGGTTCGTATGATGTAGAGGTAAAAGGACCAACCTTTAAGG  442
            |||||||||||| |||||||  || |  ||||||||||||||||||||||||||||||||
Sbjct  617  CTAGTGAAGAGGGAAGTAAGAATT-G--TGATGTAGAGGTAAAAGGACCAACCTTTAAGG  673

Query  443  ACTTGGGTGGGTTAA  457
            |||| ||||||||||
Sbjct  674  ACTTTGGTGGGTTAA  688



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 106977361395


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5