BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906917
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27750.1 | Symbols: | F-box/FBD-like domains containing pro... 676 0.0
> AT5G27750.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:9828237-9830161 FORWARD LENGTH=1652
Length=1652
Score = 676 bits (366), Expect = 0.0
Identities = 651/783 (83%), Gaps = 42/783 (5%)
Strand=Plus/Plus
Query 211 GATGAAGAATATGAA-ATAGTGTTCATTAACTTCATCGACAGGTTTCTCGATTTTAATCC 269
||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||
Sbjct 264 GATGAAGAATATGAACA-AGTGTTCATTAACTTCATCGACAGGTTTCTAGAGTTTAATCC 322
Query 270 TGATTCACAGAG-GCAAAAATTCAAGGTAGATGACAGTAAG-CATGAGATACTCATGTTC 327
||| |||| | ||||| |||| |||||||| ||| ||| | |||||||| | ||||
Sbjct 323 TGAGTCAC-GCCTGCAAACATTCGAGGTAGATTACAA-AAGGCGTGAGATACGCGGGTTC 380
Query 328 AAGGATCATAACGGTACAATGATTAACCGCGGAATTCGACTTCTTGATGCTGTGAGCAGT 387
||||||| | ||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 381 AAGGATCGGATCGGTACAGCGATTAACCGCGGAATTCGACTTCTAGATGCTGTGAGTAGT 440
Query 388 ACCGAA-TATCAAGAGGATGACGGCATTATGTATCCTTATTTCGAGTTCATGCCTTTGAA 446
||| | ||| ||||| || ||||||||||||||||||| |||||||||||| ||||
Sbjct 441 ACC-ATGTATTGGGAGGAGGAATGCATTATGTATCCTTATTTGGAGTTCATGCCTCTGAA 499
Query 447 TCTGTTTACGAGCAAGACATCGTTTTCTTTAAAGCTCTCTTT-TTCGGATCTTCGGGATC 505
||| ||||| |||||||| | | || ||||||||||| | ||||| |||| ||||
Sbjct 500 TCTCTTTACAAGCAAGACGTTGGTTACTTTAAAGCTC-CGGGATTCGGCTCTTAACGATC 558
Query 506 CGGATTTTG-TTTCTATGCCTTGTCTTAAAGT-CATGTTTCTTCAG-GAAATTCGATGGT 562
||| ||| | ||||||||||||||||||| || |||| |||||| | ||| |||||||||
Sbjct 559 CGGGTTT-GCTTTCTATGCCTTGTCTTAA-GTTCATGATTCTTC-GTGAAGTTCGATGGT 615
Query 563 CTGGTACTATGCA-TCTTGAAAAGCTTGTCTCAGGATGTCCTGTTCTTGAAGACTTGACC 621
||||||| ||| | |||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct 616 CTGGTACCATG-AGTCTTGAGAAGCTTGTCTCTGGATGTCCTGTTCTTGAAGACCTGACC 674
Query 622 TTGGTAAGGTATCTTGACGAGGATGA-ATTGGTG-C--T---T-GC-GCTTACA-GTTGT 671
||||||||| | ||||| | | | | |||| || | | | || | |||| || ||
Sbjct 675 TTGGTAAGG-ACCTTGAT-ATG-TCATATTGATGACGATGAATTGCCGGTTACTCGT-GT 730
Query 672 GAGGTCTGGGAG-CTTGAAGAC-TTTATATGTTCCGTTCGCATATGGAAGTTA--TTGTA 727
||| ||| |||| || |||||| ||| ||||||||| |||| |||||| || | |||||
Sbjct 731 GAGATCTCGGAGTCT-GAAGACGTTT-TATGTTCCGCTCGCGTATGGA-GT-AGGTTGTA 786
Query 728 GATCAAGAGTCCCAAACACAGTACTTGAGATTGATGCTCGAGGACTAGAGCATATGACTC 787
| |||||||||||| ||| |||||||||||||||||||| |||||||||| |||||||||
Sbjct 787 GGTCAAGAGTCCCAGACAAAGTACTTGAGATTGATGCTCCAGGACTAGAGAATATGACTC 846
Query 788 TCAAAGAAAAACATTTCGA-GAAAATTATAGTAAAGAACCTTACTTGTATGTTCATGATT 846
|||||||| | |||||||| | || | | ||||||||||| |||| | |||||||||||
Sbjct 847 TCAAAGAAGACCATTTCGATGGAA-TCGTGGTAAAGAACCTGACTTCTTTGTTCATGATT 905
Query 847 GACCTTGATTTCAAGTTTGTTGTCAAGTACGGCAGTATTTTTGATCCAGAGGATTTATCA 906
|| ||| || ||||||||| |||| | ||| |||| | ||||||||||||||| |||||
Sbjct 906 GAACTTAATATCAAGTTTGCTGTCGATTACCGCAGGAGTTTTGATCCAGAGGACTTATCG 965
Query 907 AAGACAAATGAAATCCTTGGTTTTCTCACTGGGATATCTCGTGCAAGACATATGATCATC 966
|||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AAGAGAAATGAAATTGGTGATTTTCTCACTGGGATATCTCGTGCAAGACATATGATCATC 1025
Query 967 TCT 969
|||
Sbjct 1026 TCT 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5