BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906918

Length=411
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G29028.1 | Symbols:  | transposable element gene | chr5:1106...   148    3e-35


> AT5G29028.1 | Symbols:  | transposable element gene | chr5:11060647-11062141 
FORWARD LENGTH=1495
Length=1495

 Score =  148 bits (80),  Expect = 3e-35
 Identities = 116/134 (87%), Gaps = 0/134 (0%)
 Strand=Plus/Plus

Query  234  GTTTGAAATCGATAATGAAGTTGGGAAGGTAGTCTCCAATTGTATAAAAGGATACTTCAC  293
            ||||||  | |||||||||||||||||||| ||||| || |  || ||| ||||||||||
Sbjct  105  GTTTGAGGTTGATAATGAAGTTGGGAAGGTGGTCTCTAACTACATCAAATGATACTTCAC  164

Query  294  TAAACCCCACGCCAACATCTCACAAATACCTAAGAAGATTGTTGACACTTGGTTTCATAT  353
            | |||| ||||| |||||||||||   |||||||||||||||||||||||||||||| ||
Sbjct  165  TGAACCTCACGCTAACATCTCACAGGCACCTAAGAAGATTGTTGACACTTGGTTTCACAT  224

Query  354  GTTTGCGGTAATTG  367
             |||||||||||||
Sbjct  225  TTTTGCGGTAATTG  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19453618863


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5