BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906919

Length=651
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60450.1 | Symbols: ARF4 | auxin response factor 4 | chr5:24...   388    3e-107


> AT5G60450.1 | Symbols: ARF4 | auxin response factor 4 | chr5:24308322-24312698 
REVERSE LENGTH=3114
Length=3114

 Score =  388 bits (210),  Expect = 3e-107
 Identities = 277/306 (91%), Gaps = 18/306 (6%)
 Strand=Plus/Plus

Query  289   GCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGAATCCC  348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  1469  GCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGAGTCCT  1528

Query  349   ATTTGCATAGGCACAAGATTCATAATGCGATTTGAAATGAACGACTCTCCTGAGAGA---  405
              ||||||||||||||||||| | |||||||||||||||| |||| ||||||||||||   
Sbjct  1529  GTTTGCATAGGCACAAGATTTAGAATGCGATTTGAAATGGACGATTCTCCTGAGAGAAGA  1588

Query  406   TGCGCTGGTGTAGTGGCTGGAGTCTATGACTTGGACCCATATAGGTGGCCAAACTCTAAA  465
             ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct  1589  TGCGCTGGTGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACTCTAAA  1648

Query  466   TGG---TGC--G--------ATGGGATGAGTCTT--GTGAGTGATCATCAAGAAAGAGTT  510
             |||   |||  |        ||||||||||||||  ||||||||||||||||||||||||
Sbjct  1649  TGGAGGTGCTTGTTGGTGCGATGGGATGAGTCTTTTGTGAGTGATCATCAAGAAAGAGTT  1708

Query  511   TCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTAAGCATTCAGTCATCTCCA  570
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1709  TCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTGAGCATTCAGTCATCTCCA  1768

Query  571   AGGCCT  576
             ||||||
Sbjct  1769  AGGCCT  1774



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31446576022


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5