BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906953
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64460.1 | Symbols: | Protein kinase superfamily protein | ... 1491 0.0
AT1G64470.1 | Symbols: | Ubiquitin-like superfamily protein | ... 863 0.0
> AT1G64460.1 | Symbols: | Protein kinase superfamily protein
| chr1:23943499-23944680 REVERSE LENGTH=1095
Length=1095
Score = 1491 bits (807), Expect = 0.0
Identities = 874/907 (96%), Gaps = 2/907 (0%)
Strand=Plus/Plus
Query 772 ATGCAAGATTCTTCAGGTCTCAACTATGTATCTGTCTTCAAGCCCATGGATGAGGAACCA 831
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1 ATGCAAGATTCTTCAGGTCTCAACTATGTATCTGTGTTCAAGCCTATGGATGAAGAACCA 60
Query 832 ATGGCTGTGAACAATCCTCAGCAGCTTCCTGTGTCATCAGACGGTCAGGGATTGAAGAGA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGGCTGTGAACAATCCTCAGCAGCTTCCTGTGTCATCAGACGGTCAGGGATTGAAGAGA 120
Query 892 GGAACTAGAGTAGGAGAAGGGGCAACAAGAGAAGTTGCTGCTTACTTGTTAGATCATCCA 951
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 GGAACTAGAGTAGGAGAAGGGGCAACAAGAGAAGTTGCAGCTTACTTGTTAGATCATCCA 180
Query 952 AAAAGCGGACCGAGATCTGTGTCTAAAGAAGTTATGGGTTTTGCCGGTGTGCCACCAACT 1011
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGAGCGGACTAAGATCTGTGTCTAAAGAAGTTATGGGTTTTGCCGGTGTGCCACCAACT 240
Query 1012 GCTATGGTCAGAAGCTCACACAAAGTTTATAACTACCTAAAGGGGTTCAGCAGTTGTGCT 1071
|||||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||
Sbjct 241 GCTATGGTCAGAAGCTCACACAAAGTGTATAACTACCCAAATGGGTTCAGCAGCTGTGCT 300
Query 1072 ACAAAAGATGCCAAAATTGGTTCTCTGCAAATGTTCATGAAGAACAATGGAAGCTGCGAA 1131
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 ACAAAAGATGCCAAAGTTGGTTCTTTGCAAATGTTCATGAAGAACAATGGAAGCTGCGAA 360
Query 1132 GACATTGGCCCTGGAGCTTTTCCTGTCGAGGAAGTGCACAAAATCTGCGTCTTTGACATA 1191
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 361 GACATCGGCCCTGGAGCGTTTCCTGTTGAGGAAGTGCACAAAATCTGTGTCTTTGACATA 420
Query 1192 AGAATGGCAAATGCAGATCGACATGCTGGAAACATATTGACCGGGAAAAGCGAAGAAGGA 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAATGGCAAATGCAGATCGACATGCTGGAAACATATTGACCGGGAAAAGCGAAGAAGGA 480
Query 1252 AAAACTCTTCTTATTCCCATCGATCATGGCTATTGTTTGCCCGAGAATTTTGAAGATTGT 1311
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 AAAACTCTTCTTATTCCCATCGATCATGGTTATTGTTTGCCCGAGAATTTTGAAGATTGC 540
Query 1312 ACATTTGAGTGGCTCTACTGGCCGCAAGCGAAACTCCCGTTTTCTGCAGATACTC-TTGA 1370
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 541 ACATTTGAGTGGCTCTACTGGCCGCAAGCGAAACTCCCGTTTTCTGCAGACAC-CATTGA 599
Query 1371 CTACATAAACTCGCTAGACTCCGAACAAGACATCGCGCTTCTGCAACTCCATGGCTGGAA 1430
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CTACATAAACTCTCTAGACTCCGAACAAGACATTGCGCTTCTGCAACTCCATGGCTGGAA 659
Query 1431 TGTTCCTGAAGCTGTCTCACGCACGCTACGTATCTCCACGATGCTGCTGAAGAAAGGCGT 1490
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 TGTTCCTGAAGCTGTCTCACGCACTCTACGTATCTCCACGATGCTGCTGAAGAAAGGCGT 719
Query 1491 TGAGAGAAACCTGACGCCCTATCAAATAGGAAGCATAATGTGCAGAGAAACGGTGAACAA 1550
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 720 TGAGAGAAACCTGACGCCATATCAAATAGGAAGCGTAATGTGCAGAGAAACGGTGAACAA 779
Query 1551 AGACTCAGCGATTGAAGAGATAGTGAGAGAAGCTCATAACTCGGTGTTACCTGCGTCTAG 1610
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 780 AGACTCAGCGATTGAAGAGATAGTGAGAGAAGCTCATAACTCGGTGTTGCCTGCGTCAAG 839
Query 1611 TGAGGCTACGTTTCTTGAAGCTGTCTCTGTAGCCATGGATCGTCGTCTGGACGAGCTAAC 1670
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 840 CGAGGCTACGTTTCTTGAAGCAGTATCTGTGGCCATGGATCGTCGTCTGGACGAGCTAAC 899
Query 1671 TAAGTAA 1677
|||||||
Sbjct 900 TAAGTAA 906
> AT1G64470.1 | Symbols: | Ubiquitin-like superfamily protein
| chr1:23944722-23945772 REVERSE LENGTH=1051
Length=1051
Score = 863 bits (467), Expect = 0.0
Identities = 534/566 (94%), Gaps = 6/566 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTTGCTGATGTTGCTTTAAGCCCGATTCATAGAGGATCGGGGTTTGCTTTTGGT 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 347 ATGTCTGTTGCTGATGTTGCTTTAAGCCCGATTCATAGAGGATCGGCGTTTGCTGTTGGT 406
Query 61 GGTTACCAAGAATC--C-ACG-CAC-TT-CTCTGTCAAATCAGTTTTGGTCTTCCTCACT 114
|||| | | |||| | ||| | | || |||||| ||||| |||||||| ||||| | |
Sbjct 407 GGTTTCGGACAATCGACGACGACGCATTACTCTGTTAAATCGGTTTTGGTGTTCCTTAGT 466
Query 115 GTTTCTGGTTCTACGATGCCTATGCTCATCTTGGAGTCTGATTCTATTGCCGAGGTTAAA 174
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 467 GTTTCTGGTTCTACGATGCCTATGCTCATCTTGGAGTCTGATTCTATTGCTGAGGTTAAA 526
Query 175 CTTAGGATCCAGACTTGTAATGGTTTTCGGGTTAGAAGACAGAAACTTGTTTTCAGTGGT 234
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 527 CTTAGGATCCAGACTTGTAATGGTTTTAGGGTTAGAAGACAGAAACTTGTTTTCAGTGGT 586
Query 235 CGAGAGCTCGCTAGGAATGCGTCACGTGTGAAGGATTATGGTGTGACTGGTGGTAGTGTG 294
|||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 587 CGAGAGCTTGCCAGGAATGCCTCACGTGTGAAGGACTATGGTGTGACTGGTGGTAGTGTG 646
Query 295 TTGCATTTGGTGCTTAAGCTCTATGATCCTTTGCTTGTCACTGTGATTACCACTTGCGGC 354
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 647 TTGCATTTGGTGCTTAAGCTCTATGATCCTTTGCTTGTTACTGTGATTACTACTTGCGGC 706
Query 355 AAGGTCTTTCAGTTTCATGTGGATCGTCGTAGAAATGTTGGCTATTTGAAGAAACGGATC 414
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 707 AAGGTCTTTCAGTTTCATGTGGATCGTCGTAGAAATGTTGGGTATTTGAAGAAACGGATC 766
Query 415 TCTAAAGAGGGTAAAGGGTTTCCTGAGGTTGATGATCAAGAGATCTTGTTTAAAGGAGAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TCTAAAGAGGGTAAAGGGTTTCCTGAGGTTGATGATCAAGAGATCTTGTTTAAAGGAGAG 826
Query 475 AAGCTTGATGACAACAGAATCATCGATGGGATTTGTAAAGAAGGAAACTCTGTGATACAT 534
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||
Sbjct 827 AAGCTTGATGACAACAGAATCATTGATGGGATTTGTAAAGATGGAAACTCTGTAATCCAT 886
Query 535 TTGCTGGTTAAGAAATCGGTCGAAGA 560
|||||||||||||||||||| |||||
Sbjct 887 TTGCTGGTTAAGAAATCGGTGGAAGA 912
Score = 206 bits (111), Expect = 8e-52
Identities = 132/142 (93%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 586 GAAGATACATTGAAAAGAGAAGAAGACGTTGCTTCTGGTAAAGACTTCTTGTTAGAGCCT 645
||||| || ||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 908 GAAGACACGGTGAAAAGAGAAGAAGACACTGCTACTGGTAAAGACTCCTTGTTAGAGCC- 966
Query 646 GTTGTTCTTAACCCCGCTGTGAAATTACCTGAGGTTCTCGAGGATATGATTGACCGCACG 705
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 967 GTTGTTCTTAACCCCGATGTGAAATTACCTGAGGTTCTCGAGGATATGATTGACCGGACG 1026
Query 706 GTTGATGGGTTGAACAAAGGTA 727
||||||||||||||||||||||
Sbjct 1027 GTTGATGGGTTGAACAAAGGTA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82881099795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5