BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906954
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64450.1 | Symbols: | Glycine-rich protein family | chr1:23... 1454 0.0
> AT1G64450.1 | Symbols: | Glycine-rich protein family | chr1:23941598-23942846
REVERSE LENGTH=1249
Length=1249
Score = 1454 bits (787), Expect = 0.0
Identities = 966/1050 (92%), Gaps = 21/1050 (2%)
Strand=Plus/Plus
Query 1 ATGGCCAAGCCTCACGGTCGTCGCCGTTCTTCTGGCCGAACAAACCTAGCTTCTTGCGCC 60
|||||||||||||||| ||||||||||||||| ||| |||| || ||||||||||||||
Sbjct 61 ATGGCCAAGCCTCACGATCGTCGCCGTTCTTCCGGCAGAACTAATTTAGCTTCTTGCGCC 120
Query 61 GTCGCCACCGTCTTCTTGCTCATCTTACTCGTTGTCCTTCTTGTTGTTTACTTCACAGTC 120
||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 121 GTCGCCACCGTCTTCTTACTCATCTTACTCGTTGTTCTCCTTGTCGTTTACTTCACAGTC 180
Query 121 TTCAAACCAAAAGACCCCAAGATCTCCGTTAACGCCGTCCAACTTCCGTCATTTGCCGTC 180
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 181 TTCAAACCAAAAGACCCCAAGATCTCCGTTAACGCCGTCCAACTCCCCTCATTCGCCGTC 240
Query 181 TCCAACAACACAGCCAACTTCACTTTCTCTCAATACGTCGCCGTTAGAAACCCTAACCGT 240
|| ||||| || || |||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 241 TCAAACAATACCGCTAACTTCTCCTTCTCTCAGTACGTCGCCGTTAGAAACCCTAACCGT 300
Query 241 GCCGTTTTCTCTCATTACGACAGCTCTATTCAGCTTCTTTATTCGGGTAATCAAGTCGGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCCGTTTTCTCTCATTACGACAGCTCTATTCAGCTTCTTTATTCGGGTAATCAAGTCGGG 360
Query 301 TTTATGTTCATACCCGCCGGTAAAATTGATTCCGGTCGGATTCAATACATGGCTGCCACT 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 361 TTTATGTTCATACCCGCCGGTAAAATTGATTCGGGTCGGATTCAATACATGGCCGCCACT 420
Query 361 TTCACCGTCCAATCCTTCCCTATTTCTCTTCCTTCCTCCTCCGCCATCTCCACCGTCTCC 420
|| ||||| || || ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 421 TTTACCGTTCATTCTTTCCCTATTTCTCCTCCTTCCTCCTCCGCTATCTCCACCGTCTCT 480
Query 421 GCCGCCGTTGTTCCAGACTCTCCGGTAATACCCGGTCCACCGGATTTCACAGTAACTCCG 480
||||||||| |||||||||||||| | || |||||||||||||||||||| ||||||||
Sbjct 481 GCCGCCGTTATTCCAGACTCTCCGATTATTCCCGGTCCACCGGATTTCACTGTAACTCCA 540
Query 481 AGAAACCCAGATTCGCCGTATTTCCCAGGATATCCAGAATCGCCGGATTTACCGGGGAAT 540
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 541 AGAAACCCAGATTCACCGTATTTTCCAGGATATCCAGAATCGCCGGATTTACCGGGAAAT 600
Query 541 CCAGTTTCGCCGGATTTTCCTGGGAATCCGGGTCCTCCGAGTTTTCCGAGGAATCCAGGC 600
|||| ||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 601 CCAGGTTCACCGGATTTTTCTGGGAATCCGGGTCCTCCGAGTTTCCCGAGAAATCCAGGC 660
Query 601 TCGCCGGAGTTTCCAGGGAACCCAGGAGCTCCGGTTTTACCGAGAAATCCAGGTTCGCCG 660
||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||
Sbjct 661 TCGCCGGAGTTTCCAGGAAACCCAGGAGCTCCGATTATACCGAGAAATCCAGGCTCGCCG 720
Query 661 GAATTTCCAGTGAATCCTCCGAGAAATCCAGGTGCTCCGGCGTTTCCGAGAAACCCAAAT 720
||||||||| | ||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 721 GAATTTCCAATAAATCCACCGAGAAATCCAGGTGCTCCGGTGATTCCGAGAAACCCAAAT 780
Query 721 TCACCGGTTTTTCCAGGGAATCCCGGGTCGGGTAACCCGCGAAACATGGGTCCACCGGGT 780
|||||||||||||||| || |||| | || || | |||||||||||||
Sbjct 781 CCACCGGTTTTTCCAGGTAA-CCCGAG------AA---GC-A----TGGGTCCACCGGGG 825
Query 781 TTTCCAGGAATCGGAGCTCCGCCGGGATTTCCGGGTACGCCGGTGGGATTCGGCGGGGGA 840
||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||
Sbjct 826 TTTCCTGGAATCGGAGGTCCGCCGGGATTTCCGGGTACGCC------ATTCGGCGGAGGA 879
Query 841 GGAACGGGGCCAACGCTGGGAGATGGATATGCGAATCCGGGTTTCGGGTATGGGAATCGG 900
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GGGACGGGGCCAACGCTAGGAGATGGATATGCGAATCCGGGTTTCGGGTATGGGAATCGG 939
Query 901 GTCGGACCAACAATGGAGATAGAGTCGAAGATGGAGTTAGCGGGTCGGGTCAAAGTGCTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GTCGGACCAACAATGGAGATAGAGTCGAAGATGGAGTTAGCGGGTCGGGTCAAAGTGCTG 999
Query 961 CACGTGTTCACACATCACGTGGTTGCTAAATCGGATTGTCGGGTCACCGTCTCTATTGCC 1020
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1000 CACGTGTTCACACATCACGTGGTTGCTAAATCGGATTGTCGAGTCACCGTCTCTATTGCC 1059
Query 1021 GATGGTTCCGTCTTGGGCTTCCATTGCTAA 1050
||||||||||||||||| ||||||||||||
Sbjct 1060 GATGGTTCCGTCTTGGGTTTCCATTGCTAA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5