BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906968
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1038 0.0
> AT1G64340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41810.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:23878125-23881073 FORWARD LENGTH=1230
Length=1230
Score = 1038 bits (562), Expect = 0.0
Identities = 717/788 (91%), Gaps = 26/788 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGTCAAACAAAGAGCCTTGGAGTCACCGAAGATGGCAACAAAAGCGGATGGTGAG 60
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 1 ATGGAGGTCAAACAAAGAGCCTTGGAGTCACCCAAGATGGAAACAAAAGCGGAGGGTGAG 60
Query 61 GAGAAG---ACAAATAAAGATGATATGATGATTAAAGGGCATATCAAAATCACTGAGGGT 117
||||| ||||| ||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 61 AAGAAGATCACAAAGAAAGATGATATGATGATTAAAGGGCATCTCGAAATCATTGAGGGT 120
Query 118 TTAAGA-AAAGCTAAGACGACAAGAGATGATCAATCTTCTAAGA----G----C-T--TG 165
|||||| ||| ||||||||| ||||||||||||||||||||||| | | | |
Sbjct 121 TTAAGACAAA-CTAAGACGATAAGAGATGATCAATCTTCTAAGAGCTCGACATCATCATC 179
Query 166 A-CATCATCATCATATATTATGAAAATCAAGATTGGAAATTGTGAGTTATCAGACAAAAA 224
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 ATCATCATCATCATATATTATGAAAATCAAGATTGGAAATTGTGAGTTATCAGGCAAAAA 239
Query 225 CTCGATACAAAGATCAGAAAACACTAAAAAGATGGAAA-ATCACCCAAAGAACAAGATGG 283
|||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 240 CTCGATTCAAAGATCAGAAAACACTAAAATGATGGAAACAT-ACCCAAAGAACAAGATGG 298
Query 284 TGATCATGAATCCGAAACAAAACACAGAAGAGAGTACCAATCTTGATAAGATGAAGAAGA 343
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 299 TGATCATGAATCCGAAACTAAACACAGAAGAGAGTACCAATCTTGATAAGATGAAGAATA 358
Query 344 AGAAGGTGTGGGATTGCGAAAGTACACTCTATGACTCGTTCGAGCTCAACTCTTTCAATC 403
||| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 359 GGAAAGTATGGGACTGCGAAAGCACACTCTACGACTCGTTCGAGCTCAACTCTTTCAATC 418
Query 404 GCCAACTCGACTCAGCCATCTCCTCCTCAGCTAGATCCATGTCCATGCCACACCTCTCTC 463
|||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 419 GCCAACTCAACTCAGCCATCTCTTCCTCAGCTAGATCCATGTCCATGCCTCACCTCTCT- 477
Query 464 CTACTCCTCCTCCACCGTCAGAAACAACGTCTTCTTTAACCAAGAAACAACAATCCCCTA 523
| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 478 -T-CTCCTCCTCCACCGTCAGAAACAACATCTTCTTCAACCAAGAAGCAACAATCCCCTA 535
Query 524 CCAAGAAGATCTCACGTTCTCTGGGGAAACTCATTAAGTCAATGTTGAGACAGAAACAAT 583
|||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct 536 CCAAGAAGATCTCACGTTCTCTCGGGAAACTCATTAAATCAATGTTCAAACAGAAACAAT 595
Query 584 CAAATGCT-TCGTTTAAGGCAGGTCAC-GACGAAGTAGACATGGACAAATACTACGTTGT 641
|||| ||| | ||||||| ||||||| | || ||||||||||||||||||||||||||
Sbjct 596 CAAACGCTCT-GTTTAAGACAGGTCATAG-CGGTGTAGACATGGACAAATACTACGTTGT 653
Query 642 TTTCGATAAGACGGGCTCGCTTACGACGATCCCCGAGTCAGGAGAGTCAACAGAGATGGT 701
||| || ||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct 654 TTTTGACAAGACGGGCTCACTCACCACGATCCCCGAGTCTGGAGAGTCAACAGAGATGGT 713
Query 702 TGGCTCAGAGATCAACTCGCTTGTTAGAAAAACAACGTCCGAGCGAATCCCGCTGAGTCG 761
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 714 TGGCTCAGAGATCAACTCGCTTGTTAGGAAAACAACGTCCGAGCGAATCCCGCAGAGTCG 773
Query 762 GCTTGTTG 769
||| ||||
Sbjct 774 GCTCGTTG 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5