BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906969
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32060.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 569 6e-162
AT1G15930.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd... 399 8e-111
> AT2G32060.1 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr2:13639016-13640316 REVERSE LENGTH=761
Length=761
Score = 569 bits (308), Expect = 6e-162
Identities = 376/409 (92%), Gaps = 4/409 (1%)
Strand=Plus/Plus
Query 17 CTGTTGTTCCTCCGGTTGCTGAGGCAGCAGTGATCCCAGAGGACATGGAT-TTAATGACT 75
|||| |||||||| |||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 143 CTGTGGTTCCTCCTGTTGCTGAGGCAGCAGTGATCCCAGAGGACATGGATGTGAGT-ACT 201
Query 76 GCAGCGGAGTTGACAATTAGGAAATCTTGTGCTTATGGTGGTGTTGTTCGTGGTCTCCAT 135
||| ||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 202 GCATTGGAGTTGACTGTAAGGAAATCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTCCAT 261
Query 136 GAAAGCACTAAGCTTATTGAGAAGCGTGTTGCTCAGCTCTGTGTCTTGGCTGAAGATTGC 195
|||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 262 GAAAGCGCTAAGCTTATTGAGAAGCGTAATGCTCAGCTCTGTGTCCTGGCTGAAGATTGC 321
Query 196 AACCAACCTGATTATGTCAAGCTGGTTACAGCTCTTTGCACTGACCACAACATCAATTTG 255
||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||| |||
Sbjct 322 AACCAACCTGATTATGTCAAGCTTGTTAAAGCTCTTTGCGCTGACCACAGCATCAAATTG 381
Query 256 CTTACGGTTCCCAGTGCCAAAACCCTCGGCGAATGGGCTGGTCTTTGCAAGCTTGATTCA 315
||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 382 CTTACTGTTCCAAGTGCCAAAACACTCGGCGAATGGGCTGGTCTTTGCAAGATTGATTCT 441
Query 316 GAGGGCAATGCGAGGAAGGTTGTTGGATGCTCATGTCTTGT-AGTCAAGGATTACGGTGA 374
||||||||||| |||||||||||||||||||||||||| || | ||||||||| ||||||
Sbjct 442 GAGGGCAATGCAAGGAAGGTTGTTGGATGCTCATGTCTCGTGA-TCAAGGATTTCGGTGA 500
Query 375 GGAGACGACTGCACTAAACATTGTCAAGAAGCATCTTGAATCTAACTAA 423
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 501 GGAGACAACTGCACTAAACATTGTCAAGAAGCATCTTGATTCTAACTAA 549
> AT1G15930.2 | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein | chr1:5471400-5473014 FORWARD LENGTH=825
Length=825
Score = 399 bits (216), Expect = 8e-111
Identities = 342/402 (85%), Gaps = 11/402 (3%)
Strand=Plus/Plus
Query 18 TGTTGTTCCT---CCGGTTGCTGAGGCAGCAGTGATCCCAGAGGACATGGATTTAATGAC 74
|||||||||| || ||||||||| |||| | ||||||||||||||||| ||||||||
Sbjct 144 TGTTGTTCCTCCCCCCGTTGCTGAGCCAGCGGCCATCCCAGAGGACATGGACTTAATGAC 203
Query 75 TGCAGCGGAGTTGACAATTAGGAAATCTTGTGCTTATGGTGGTGTTGTTCGTGGTCTCCA 134
|||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 204 TGCATTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTCCA 263
Query 135 TGAAAGCACTAAGCTTATTGAGAAGCGTGTTGCTCAGCTCTGT-GTCTTGGCTGAAGATT 193
||| | |||||||||||||||||||||| ||||| ||| || |||||||||||||| |
Sbjct 264 TGAGTGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAACTC-GTTGTCTTGGCTGAAGACT 322
Query 194 GCAACCAACCTGATTATGTCAAGCTGGTTACAG-CTCTTTGCACTGACCAC-AACATCAA 251
||||||| ||||||||||||||||| || | || |||| || |||| ||| || |||
Sbjct 323 GCAACCAGCCTGATTATGTCAAGCTTGTGA-AGGCTCTCTGTGCTGATCACGAAG-TCAG 380
Query 252 TTTGCTTACGGTTCCCAGTGCCAAAACCCTCGGCGAATGGGCTGGTCTTTGCAAGCTTGA 311
||||| || ||||| |||||||| ||||| ||||||||||||||||| |||||| ||||
Sbjct 381 GTTGCTAACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTCTCTGCAAGATTGA 440
Query 312 TTCAGAGGGCAATGCGAGGAAGGTTGTTGGATGCTCATGTCTTGTAGTCAAGGA-TTACG 370
||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 441 TTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAGGACTT-CG 499
Query 371 GTGAGGAGACGACTGCACTAAACATTGTCAAGAAGCATCTTG 412
| |||||||| ||||| || | || ||||| |||||| |||
Sbjct 500 GCGAGGAGACAACTGCCCTCAGTATCGTCAATAAGCATATTG 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20056831851
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5