BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906971

Length=1263
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62920.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Proteasom...   119    8e-26


> AT1G62920.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Proteasome 
maturation factor UMP1 (InterPro:IPR008012); BEST Arabidopsis 
thaliana protein match is: Proteasome maturation factor 
UMP1 (TAIR:AT1G67250.1); Has 70 Blast hits to 70 proteins 
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:23304313-23306374 FORWARD LENGTH=783
Length=783

 Score =  119 bits (64),  Expect = 8e-26
 Identities = 76/82 (93%), Gaps = 0/82 (0%)
 Strand=Plus/Plus

Query  1020  AAGATGCTCAAACCAGTTGACTTCCACCACCACGACATGGAAGTTCGGCTTGGTCTCTCC  1079
             |||||||||||||||||||||||||||||||||| |||||||||| || || ||||||||
Sbjct  252   AAGATGCTCAAACCAGTTGACTTCCACCACCACGTCATGGAAGTTGGGGTTAGTCTCTCC  311

Query  1080  AAACGCCCAGCTTACCCAAGTT  1101
             ||| |||||||||| |||||||
Sbjct  312   AAAGGCCCAGCTTAACCAAGTT  333


 Score = 71.3 bits (38),  Expect = 2e-11
 Identities = 49/54 (91%), Gaps = 2/54 (4%)
 Strand=Plus/Plus

Query  1112  GCTGCGGAGATGAT--ATGCAGCGCCGTCATCAAGTTCAGGGACCAAAACTCTT  1163
             |||| ||| |||||   |||||||||||||||||||||||||||||||||||||
Sbjct  418   GCTGGGGAAATGATCCTTGCAGCGCCGTCATCAAGTTCAGGGACCAAAACTCTT  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 62098074165


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5