BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg906983

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43180.1 | Symbols:  | Phosphoenolpyruvate carboxylase famil...   224    7e-58


> AT2G43180.1 | Symbols:  | Phosphoenolpyruvate carboxylase family 
protein | chr2:17953497-17955829 REVERSE LENGTH=1717
Length=1717

 Score =  224 bits (121),  Expect = 7e-58
 Identities = 140/149 (94%), Gaps = 1/149 (1%)
 Strand=Plus/Plus

Query  399   AGAAGCGAGCAGCAGTAGCGTCTATGGTAATCAACGGGTGGCTCAAGATGATCCAGAACA  458
             ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  1138  AGAAGTGAGCAGCAGTAGCGTCTATCGTAATCAACGGGTGGCTAAAGATGATCCAGAACA  1197

Query  459   GAGAGATGACCCGATTGTTGAAGTCATAACACCTGAGGTTTACAATGAACCAAGAAACCC  518
             |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1198  GAGAGAGGACCTGATTGTTGAAGTCATAACACCTGAGGTTTATAATGAACCAAGAAACCC  1257

Query  519   CTTT-CACGGATCTGGTCACGATCATTGA  546
             |||| | ||||||||||||||||| ||||
Sbjct  1258  CTTTTCGCGGATCTGGTCACGATCTTTGA  1286


 Score =  147 bits (79),  Expect = 1e-34
 Identities = 97/106 (92%), Gaps = 0/106 (0%)
 Strand=Plus/Minus

Query  162  TACTCCAATCAATGAAATTGGATACGCCACTAGCTTATATCCAATATCTTCTAGCTCAAG  221
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  982  TACTCCAATCAATGAAATTGGATACGCCACTAGCTTATATCCAATCTCTTCTAGCTCCAG  923

Query  222  CGGGTTTAGGATAGGAACTTTCCCTCCATTTTCTAGCATATTAGCC  267
            ||||||||| || |||| ||| |||||  |||| ||||||||||||
Sbjct  922  CGGGTTTAGAATTGGAATTTTTCCTCCGCTTTCAAGCATATTAGCC  877



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5