BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg906998
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64150.1 | Symbols: | Uncharacterized protein family (UPF00... 1685 0.0
> AT1G64150.1 | Symbols: | Uncharacterized protein family (UPF0016)
| chr1:23808909-23812677 REVERSE LENGTH=1349
Length=1349
Score = 1685 bits (912), Expect = 0.0
Identities = 1049/1115 (94%), Gaps = 10/1115 (1%)
Strand=Plus/Plus
Query 1 ATGCTAAGTTTGAATCTCTCCGAGTCGCTTCGCATTCCATTTCAAAACCCTAGGCCTCCC 60
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 99 ATGCTAAGTTTGAATCTCTCGGAGTCGCTTCGCATTCCATTCCAGAACCCTAGGCCTCCC 158
Query 61 AAATTCGA---TTC-T-T-GTTGTTCTTCTCCTTCCTCATCGTCGAGGAGATGCGTCTCC 114
|||| ||| ||| | | || |||||||||||||||||||||||||||||||||||||
Sbjct 159 AAATCCGATTTTTCTTCTACTTCTTCTTCTCCTTCCTCATCGTCGAGGAGATGCGTCTCC 218
Query 115 GCTTGTCCAATTCCGATAGGGTTTTCGTTTCGTAATCAATACTTCTCTAGAGGTTTGACT 174
|||| |||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 219 GCTTATCCAATTCCGATCGGGTTTTCGGTTCGTAATCAATACTTTTCTAGATGTTTGACT 278
Query 175 CAATTGCGTCGAAATGAATCTCAGCAGCTTGAATTTCGATGCTTCCGACGAAATGATTCC 234
||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||| |
Sbjct 279 CAATTGCGTCGAAATGAATCTCAGCAGCTAGGTTTTCGATGCTTCCAACGAAACGATGCG 338
Query 235 GCTTGTTACCTTGAGAAGGCTGAATCTGAAGAAAAT-ATTAGAAATCGTGATGTTTTGGT 293
||||||||||| ||||| ||||| |||||||| || | |||||||| ||||||| ||||
Sbjct 339 GCTTGTTACCTCGAGAAAGCTGAGTCTGAAGAGCATGA-TAGAAATCTTGATGTTCTGGT 397
Query 294 TGAGTCATCGGTAGCTCACTCAAGAAGAGAGACTCTTAGACTTCTTAAGTTCTTGGCGGT 353
|||||||||| ||||||||||||||||||||| || ||| |||||| ||||||||||||
Sbjct 398 TGAGTCATCGATAGCTCACTCAAGAAGAGAGATTCAGAGAGTTCTTATGTTCTTGGCGGT 457
Query 354 ATCAGGTTCGGTTGCATTACTCGGCAATGATCCAGCTTTTGCGGCTTCGTCAATTGCCAA 413
||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| ||||
Sbjct 458 ATCAGGTTCGGTTGCATTACTAGGCACTGATCCAGCTTTTGCAGCTTCGTCAATTCCCAA 517
Query 414 TGGGACGCAGTCACTTGTCACTTCTCTTGGAGACCTTGGAGATATTAGCTCAGGTTTTGC 473
|| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 518 TGTGACACAGTCACTTGTCACTTCTTTTGGAGACCTTGGAGATATTAGCTCAGGTTTTGC 577
Query 474 TTCGGCGTTT-TTGCTTATATTTTTCTCTGAACTTGGGGACAAGACTTTCTTCATTGCGG 532
|||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 578 TTCGGC-TTTCTTGCTTATCTTTTTCTCTGAACTTGGAGACAAGACTTTCTTCATTGCGG 636
Query 533 CTCTTTTAGCAGCAAGGAACTCTGCTGCTACCGTATTCGTGGGGACTTTTGGCGCTCTAG 592
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CCCTTTTAGCAGCAAGGAACTCTGCTGCTACCGTATTCGTGGGGACTTTTGGCGCTCTAG 696
Query 593 GGATAATGACGATTATATCTGTAGTGCTTGGACGTACTTTCCACTACGTCGATGAAGTTC 652
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 697 GGATAATGACGATAATATCTGTAGTGCTTGGACGCACTTTCCACTATGTCGATGAAGTTC 756
Query 653 TTCCGTTCAGGTTTGGTGAAACCGATTTGCCTATAGATGATATTGCAGCAGTTTGTCTTC 712
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 757 TTCCATTCAGGTTTGGTGGAACCGATTTGCCTATAGATGATATTGCAGCAGTTTGTCTTC 816
Query 713 TGGTTTACTTCGGTGTTTCAACGTTATTAGACGCTGTTTCGGACGAGGGTAAAGCTGACG 772
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 817 TGGTGTACTTCGGTGTTTCAACGTTATTAGATGCTGTTTCAGACGAGGGTAAAGCTGACG 876
Query 773 AAGAACAGAAAGAAGCAGAACTAGCGGTTTCAGAGCTTTCAGGTAGTGGAGCCGGGATAG 832
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 877 AAGAACAGAAAGAAGCAGAACTAGCGGTTTCAGAGCTTTCAGGTAATGGAGCCGGGATAG 936
Query 833 TAGCAGCCGCGAACACCATCATCAGCACTTTCGCATTGGTTTTTGTTGCGGAATGGGGTG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TAGCAGCCGCGAACACCATCATCAGCACTTTCGCATTGGTTTTTGTTGCGGAATGGGGTG 996
Query 893 ACAAATCCTTCTTCTCAACAATTGCTCTTGCGGCTGCATCATCGCCATTGGGTGTCATCG 952
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 997 ACAAATCCTTCTTCTCAACAATTGCTCTTGCGGCTGCATCATCACCATTGGGTGTCATCG 1056
Query 953 CTGGAGCATTGGCGGGTCACGGTGCTGCGACTCTGCTTGCGGTATTGGGAGGTTCTTTGC 1012
||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1057 CTGGAGCGTTGGCGGGTCACGGTGCTGCGACTCTTCTTGCAGTATTGGGCGGTTCTTTGC 1116
Query 1013 TCGGAAATTTCTTATCAGAGAAGGCAATTGCTTATGTCGGAGGAGTTCTGTTTCTCGTGT 1072
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TAGGAAATTTCTTATCAGAGAAGGCAATTGCTTATGTCGGAGGAGTTCTGTTTCTCGTGT 1176
Query 1073 TTGCTGCTGTGACGGTGGCTGAGATCGTTACGTAA 1107
|||||||||||||||||||||||||||||||||||
Sbjct 1177 TTGCTGCTGTGACGGTGGCTGAGATCGTTACGTAA 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5