BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907008
Length=495
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62170.2 | Symbols: | Serine protease inhibitor (SERPIN) fa... 287 7e-77
> AT1G62170.2 | Symbols: | Serine protease inhibitor (SERPIN)
family protein | chr1:22973840-22975754 FORWARD LENGTH=1728
Length=1728
Score = 287 bits (155), Expect = 7e-77
Identities = 192/210 (91%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 270 AGAAACCGCAAGTCCCTCTCTGTCAAAGAATACGGATTTGGTAATCACAAGTCCCTCTCT 329
||||| | ||||||||||||||||||||||||| |||||||||||| ||||||| |||||
Sbjct 153 AGAAATCACAAGTCCCTCTCTGTCAAAGAATACAGATTTGGTAATCGCAAGTCCTTCTCT 212
Query 330 ATCGAATATTGATGTGGGAGAAGCGATGAAGAAGCAGAACGATGTGGCTATGTTCCTTGC 389
||| |||||||||||||||||||| ||||||||||| |||||||| ||||| |||||| |
Sbjct 213 ATCAAATATTGATGTGGGAGAAGCAATGAAGAAGCAAAACGATGTCGCTATATTCCTTAC 272
Query 390 GGAGAAAGTAATCTCTGT-TGTAGCCAAAAACTCTAATTTTGTCTTCTCTCCTGCATCAA 448
|| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GGGGATAGTAATCTCT-TCCGTAGCCAAAAACTCTAATTTTGTCTTCTCTCCTGCATCAA 331
Query 449 TCAACGCCTTACTCACCATGGTTGCTGCTA 478
|||||||| ||||||||||||||||||||
Sbjct 332 TCAACGCCGCACTCACCATGGTTGCTGCTA 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23610049090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5