BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907017

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63950.1 | Symbols:  | Heavy metal transport/detoxification ...   407    4e-113


> AT1G63950.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr1:23734997-23735556 FORWARD LENGTH=345
Length=345

 Score =  407 bits (220),  Expect = 4e-113
 Identities = 305/345 (88%), Gaps = 9/345 (3%)
 Strand=Plus/Plus

Query  1    ATGATTGTGTGGATGGGTGTTTATGATCAGAAATCC-AAGAGCAAAATCTTGAAGAGTGT  59
            ||||||||||||||||||||||||||||||| |||| ||| | ||||||  ||||||| |
Sbjct  4    ATGATTGTGTGGATGGGTGTTTATGATCAGAGATCCAAAG-GGAAAATCACGAAGAGTAT  62

Query  60   TGCTGACTTACCCGGGATTCACT-ATCCTTGCATGGATTTGAAAGAAGGGACATTAACAC  118
            | ||||||||||||| ||||||| || |||  ||||||||||||||||| ||| ||  | 
Sbjct  63   TTCTGACTTACCCGGAATTCACTCAT-CTTATATGGATTTGAAAGAAGGCACACTAGTAG  121

Query  119  TGGTTGGAGATGTTAATCCTGTGGAGATCGTTA-ACAAGCTCAGAAAGAAATGGAGAAGA  177
            |  | ||||||||| ||||||||||| | |||| | || ||||||||||||||| ||| |
Sbjct  122  TAATGGGAGATGTTGATCCTGTGGAGTTGGTTAGA-AACCTCAGAAAGAAATGGGGAAAA  180

Query  178  GCTAAATTAACATTATTTGTACCTTATGATGCTTTGAAAGAAGCAAAACTTGCTGAGGCT  237
            |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  181  GCTAAATTAACATTATATGTACCTTATGATGCTTTGAAAGAAGCAAAAATTGCTGAGGCT  240

Query  238  AAGCAGAGGAGAGAAGAGATTGAACGTGAAGCTCTTTACAGATATAACCGTGAAATTCGT  297
            ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  241  AAGCAGAAGAGGGAAGAGATTGAACGTGAAGCTCTTTACAGATACAACCGTGAAATTCGT  300

Query  298  GAGATTGTCAATGATCAGGAG---CAAGGTTGTGTCATTTGCTAG  339
            || ||| |||||||| |||||   |||||||||||||||||||||
Sbjct  301  GATATTTTCAATGATAAGGAGGAGCAAGGTTGTGTCATTTGCTAG  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5