BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907025
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63855.3 | Symbols: | Putative methyltransferase family pro... 815 0.0
> AT1G63855.3 | Symbols: | Putative methyltransferase family protein
| chr1:23699369-23700967 REVERSE LENGTH=792
Length=792
Score = 815 bits (441), Expect = 0.0
Identities = 524/563 (93%), Gaps = 10/563 (2%)
Strand=Plus/Plus
Query 7 ACGACGACGACGATTTCCCAGCATGATTTCTATGGTGATGGAGATTCGGAAACTT-CAAT 65
||||||||||||||||| |||||| | |||||||||| ||||||||||||||||| | ||
Sbjct 26 ACGACGACGACGATTTCTCAGCATAACTTCTATGGTGCTGGAGATTCGGAAACTTGC-AT 84
Query 66 TTCTATATCTGTTATTGAGAATTTGAAGGAAGAGTATGGATTGTTTGTTTGGCCTTGTAG 125
||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 TTC--TA----TTATTGAGAATTTGAAGGAAGAGTATGGATTGTTTGTTTGGCCTTGTAG 138
Query 126 CGTTATCCTCGCTGAGTATGTTTGGCAACAGAGATCTCGATTTCGCCATTCTTCGGTTCT 185
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||
Sbjct 139 CGTTATCCTCGCTGAGTATGTTTGGCAACACAGATCTCGATTTCGTGATTCTTCGATACT 198
Query 186 TGAGCTAGGAGCTGGTACTTCCTTGCCTGGTTTAGTAGCTGCAAAGGTTGGGGCTAATGT 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CGAGCTAGGAGCTGGTACTTCCTTGCCTGGTTTAGTAGCTGCAAAGGTTGGGGCTAATGT 258
Query 246 CACACTTACTGATGATGCAAGTAAACCAGAGGTTCTGGACAATATGAGAAGAGTCTGTGA 305
||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||
Sbjct 259 CACTCTTACTGATGATGCAACTAAACCAGAGGTTTTGGATAATATGAGAAGAGTCTGTGA 318
Query 306 GCTTAACAAGCTAAACTGTAATGTGATGGGTCTCACCTGGGGAGTGTGGGATGCACCAAT 365
|||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| ||
Sbjct 319 GCTTAACAAGCTGAACTGTAATGTGTTGGGTCTCACCTGGGGTGTGTGGGATGCACCGAT 378
Query 366 ATTTGACCTGCAACCTAACATTATACTTGGGGCTGATGTTTTATATGATTCAAGTGGTTA 425
| | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ACTCGACCTGCGACCAAACATTATACTTGGGGCTGATGTTTTATATGATTCAAGTGGTTC 438
Query 426 TGGGCATCATCTAATCGAGTTCCTGATGGTAAAATGGGGCCTAAAGTGCGTTAAACTTCT 485
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 439 TGGGCATCATCTAATCGAGTTCCTGATGGTAAAATGGGGACTAAAGTGTGTTAAACTTCT 498
Query 486 AGATGGCTTCTCATTCTTGCCCTC-CTACAAGGCTTCTTTACTTAGTGGAAACATTCAGT 544
||||||||||||||||||||||| | | ||||| ||| |||||||||||||||||||||
Sbjct 499 GGATGGCTTCTCATTCTTGCCCTCTCAA-AAGGCATCTGTACTTAGTGGAAACATTCAGT 557
Query 545 TGGTTGAGATCGTATTGAGTTCC 567
|||||||||||||||||||||||
Sbjct 558 TGGTTGAGATCGTATTGAGTTCC 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5