BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907056
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63530.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1552 0.0
AT1G63540.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 353 2e-96
> AT1G63530.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G63540.1);
Has 10212 Blast hits to 4024 proteins in 434
species: Archae - 1; Bacteria - 1259; Metazoa - 3608; Fungi
- 2247; Plants - 291; Viruses - 90; Other Eukaryotes - 2716
(source: NCBI BLink). | chr1:23563315-23565555 FORWARD LENGTH=1925
Length=1925
Score = 1552 bits (840), Expect = 0.0
Identities = 1125/1255 (90%), Gaps = 49/1255 (4%)
Strand=Plus/Plus
Query 293 CCACACCCATTAGCTTCCTCCCATTTGGTTACGTGCCACCACCTCCACCGCGTGGTTCTT 352
|||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 381 CCACACCCATTAGCTTCCTCCCATTTGGTTACGTCCCACCACCTCCA-C-CG-AGTTCTT 437
Query 353 CACTGTTTGGGCCAGCGCAAGATATGCCTTGG-GCTCTTAATTCTTATTCTA---CAGAG 408
|||||| ||||||||||||| || |||||||| | | ||| | ||||||||| ||| |
Sbjct 438 CACTGTCTGGGCCAGCGCAAAATGTGCCTTGGAG-TATTAGTGCTTATTCTACTGCAGGG 496
Query 409 CGCGGTGTTGAATGGGCCTGGGCCAGACCCGATGTTGGTGTCT-TGCCAGCA-------- 459
||||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct 497 CGCGGTGTTGAATGGGCCTGGGCCAGACCCGATGTTGCTGTCTAT-CCAGCATCCTCCTC 555
Query 460 -TCCTCCTCTACTAGTACAGTAGTTTTTGGTACAACACCAGTGAGTGTTTCTTCACTGTA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 CTCCTCCTCTACTAGTACAGTAGTTTTTGGTACAACACCAGTGAGTGTTTCTTCACTGTT 615
Query 519 TGGGCCGTCCCAAGATTTTCCCAAGAATACTTCTGTCT-GT-GCTTCAAGCACCCCAGCA 576
|||||||||||||||||| ||||||| ||||| || || || | ||||||||||||||||
Sbjct 616 TGGGCCGTCCCAAGATTTCCCCAAGACTACTTTTG-CTTGTTG-TTCAAGCACCCCAGCA 673
Query 577 CCTACAAGGTGTGAATGTTCTTTTGCTAGACCTAGTTTTGGTTCCTCGCCAGCATCTTCA 636
|||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 674 CCTACAAGGTGTGAATGTTCTTTTGCTAAACCTTTTTTTGGTTCCTCGCCTGCATCTTCC 733
Query 637 TCTTCTAACCTTTTCGGACCAAACCCTTCGAC---TACTGCATCAGTTTTTGGTACATCT 693
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 734 TCTTCTAACCTTTTTGGACCAAACCCATCGACGACTACTGCATCAGTTTTTGGTACATCT 793
Query 694 GCAACGAGTGTTTCTTCACTTTTTGCGCCAGCGCAACATCCACTAAGTTACTACTCTGTT 753
|||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 794 GCAACGAGTGGTTCTTCACTTTTTGGGCCAGCGCAACATCCACTAAGTTACGACTCTATT 853
Query 754 GGTGGTTCAGCCTTTGCTGGTGTTAAAACATCATCTCCTCAACCTTTTGGTTTCAATGGA 813
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 854 GGTGGTTCAGCCTTTGCTGGTGTTAAAACATCATCTCCTCAACCTCTTGGTTTCAATGGA 913
Query 814 GCTACTACTCTCTTGCGGAGCTCGCATGATGGACAAAATATATCTGCTTCCAACCCTTAT 873
|||||||||||||||| |||||||||||| |||||||| |||||| ||| ||| ||||||
Sbjct 914 GCTACTACTCTCTTGCCGAGCTCGCATGAGGGACAAAACATATCTTCTTTCAAGCCTTAT 973
Query 874 CTAGACAAAAGCCCTGAAGAATTAAGGTGGGAAGATTACAAGAAAGGAGGTATAGGTGGG 933
|||| ||||||| ||| ||||||||||||||| |||||||||||| || || |||||||
Sbjct 974 GTAGATAAAAGCCATGATGAATTAAGGTGGGAATATTACAAGAAAGAAGCTAAAGGTGGG 1033
Query 934 TCGTTTCCTGCTGCTCATGCCTCTCCCATAGGCTCAAGACCCAA-CGCTGTTTTTTCACC 992
||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||
Sbjct 1034 TCGTTTCCTGCTGCTCATGCCTCTCCCATAGGCTCAA-AGCCAAACGCTGTGTTTTCACC 1092
Query 993 ATCAACTGTGTCGCCATCAATATTTGCTTCTCCAAGCGTACCTGATCATCATCAGAGGAC 1052
|||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 ATCAACGGTATCGACATCATTATTTGCTTCTCCAAGCGTACCTGATCATCATCAGAGGAC 1152
Query 1053 AAACTTTGGTACAACGCAAGGAAACTTTAATGGTCCTGCTTTTGGTTTCTTCCCTGCTTC 1112
||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1153 AAATTTTAGTACAACGCTAGGAAACTTTACTGGTCCTGCTTTTGGTTTCTTCCCTGCTGC 1212
Query 1113 TGCTGGTGGTACAACAACATTTTCACCTAGTGGTTTCGGTCAACCTAATGCGCCTTTCAC 1172
|||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 1213 TGCTGGTGGTGCTACAACATTTTCATCTACCGGTTTCGGTCAACCTAATGCGCCTTTCCC 1272
Query 1173 TAGTTTCGATACCCAGTTTCCGAGTTCTTTTTCATCGTTCTCTACTACATTTCCTGCCGA 1232
| |||||||| ||||||||||||| |||||||||| ||||| || |||| ||||||||
Sbjct 1273 TGGTTTCGATTCCCAGTTTCCGAGCGCTTTTTCATCTTTCTCGACGACATATCCTGCCGT 1332
Query 1233 AAGCTCCTGTATTCAGAGACCCCATGAAACAGCTGCTGTTTCTTCCCCAGCATTTGGATG 1292
|||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1333 AAGCTCGAGTGTTCAGAGACCCCATGAAACAGGTGCTGTTTCTTCCCCAGCATTTGGATG 1392
Query 1293 CACAGTGTGTGGAGCAACAAGTAGCTCCTCTGCTTCTGGTCACTTCACTTTTAATGGTGC 1352
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1393 CACAGCCTGTGGAGCAACAAGTAGCTCCTCTGCTTCTGATCACTTCACCTTTAATGGTGC 1452
Query 1353 CACAACTCCTCCATCAGCTGCTACAACTCCTCCCGGGTTGTTCTTTCCTACCGCTAGTTT 1412
|||||||||||| | | | | ||||||||||||||| ||||||
Sbjct 1453 CACAACTCCTCC--C-G--G--------------G--TTGTTCTTTCCTACCACTAGTTC 1491
Query 1413 TGGTCCTATGATGTTTGGTACACCTCTTGCTGTTCAAGGCACAACTCCAGCACTTCAAAC 1472
|||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1492 TGGTCCTATGATGTTTGGAACAACTCTTGCTGCTCAAGGCACAACTCCAGCACTTCAAAC 1551
Query 1473 CTATCCTGTTCAAGGTTTCATTCTTCTCCCGTTCGCCGCCATGAGTTTGCAGTAA 1527
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1552 CTATCCTGTTCAAGGTTTCATTCTTCTCCCATTCGCCGCCATGAGTCTGCAGTAA 1606
Score = 213 bits (115), Expect = 4e-54
Identities = 137/148 (93%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 81 ATCCATCACATCAGTGCCGGTTAGTTCCGGACCAGTTCAAGCTCTTGGACATGATTCTGC 140
||||||||| ||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 211 ATCCATCACTTCAGTTCCGGTTAGTTCCGGACCATTTCAAGCTCTTGGACATGCTTCTGC 270
Query 141 TGCTGTTGGTTCAACCTCAACATCATCTCCAGTTCAAAGTTCTTCACCATTCAGCTTTGG 200
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 271 TGCTATTGGTTCAACCTCAACATCATCTCCAGTTCAAAGTTCTTCATCATTCAGCTTTGG 330
Query 201 TTCCCCTCCTGCTGTCATCACATCCGTT 228
||| ||||||||| || |||||| |||
Sbjct 331 ATCCGCTCCTGCTGCCACCACATCTGTT 358
> AT1G63540.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:23566958-23569495 FORWARD LENGTH=1997
Length=1997
Score = 353 bits (191), Expect = 2e-96
Identities = 237/260 (91%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 1268 CTGTTTCTTCCCCAGCATTTGGATGCACAGTGTGTGGAGCAACAAGTAGCTCCTCTGCTT 1327
|||||||| |||||||| ||||||||| | ||||||||||| |||||||| |||||||
Sbjct 1738 CTGTTTCTCCCCCAGCACATGGATGCACTGCATGTGGAGCAACCAGTAGCTCATCTGCTT 1797
Query 1328 CTGGTCACTTCACTTTTAATGGTGCCACAACTCCTCCATCAGCTGCTACAACTCCTCCCG 1387
| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1798 CCCGTCACTTCACCTTTAATGGTGCCACAAGTCCTCCATCAGCTGCTACAACTCCTCCCG 1857
Query 1388 GGTTGTTCTTTCCTACCGCTAGTTTTGGTCCTATGATGTTTGGTACACCTCTTGCTGTTC 1447
||||||||||||||| | || |||||| ||||||||||||||||||| |||||||||||
Sbjct 1858 GGTTGTTCTTTCCTAGCACTGGTTTTGCTCCTATGATGTTTGGTACAAATCTTGCTGTTC 1917
Query 1448 AAGGCACAACTCCAGCACTTCAAACCTATCCTGTTCAAGGTTTCATTCTTCTCCCGTTCG 1507
||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1918 AAGGCACAAGTCCAGCACTTCAAGCCTATCCTGTTCAAGGTTACATTCTTCTCCCGTTCG 1977
Query 1508 CCGCCATGAGTTTGCAGTAA 1527
||||||||| | ||||||||
Sbjct 1978 CCGCCATGACTCTGCAGTAA 1997
Score = 150 bits (81), Expect = 3e-35
Identities = 117/134 (87%), Gaps = 3/134 (2%)
Strand=Plus/Plus
Query 112 CCAGTTCAAGCTCTTGGACATGATTCTGCTGCTGTTGGTTCAACCTCAACATCATCTCCA 171
|||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||
Sbjct 282 CCAGTTCAAGCTCTTGGACATGATTCTGGTGCTACAGTTTCTACCTCAACATCATCTCCA 341
Query 172 GTTCAAAGTT---CTTCACCATTCAGCTTTGGTTCCCCTCCTGCTGTCATCACATCCGTT 228
||||||| || |||||||||||||||| || ||| ||| ||||| ||||||| |||||
Sbjct 342 GTTCAAATTTTTTCTTCACCATTCAGCTTCGGATCCGCTCATGCTGCCATCACACCCGTT 401
Query 229 AGTTCCGGACCAGC 242
||||| ||||||||
Sbjct 402 AGTTCGGGACCAGC 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5