BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907076
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63260.1 | Symbols: TET10 | tetraspanin10 | chr1:23466800-23... 1280 0.0
> AT1G63260.1 | Symbols: TET10 | tetraspanin10 | chr1:23466800-23469204
REVERSE LENGTH=1419
Length=1419
Score = 1280 bits (693), Expect = 0.0
Identities = 725/741 (98%), Gaps = 0/741 (0%)
Strand=Plus/Plus
Query 1 ATGGGTATGGGCACAAGCACTTTCGTTATCAGATGGGTCAATCTTCTTACAATGCTATTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 ATGGGTATGGGCACAAGCACTTTCGTTATCAGATGGGTCAATCTTCTTACAATGCTATTG 319
Query 61 GCTGTGGCAGTGATAATATTTGGGGTGTGGATGAGTACACACAATGATGGTTGCAGAAGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GCTGTGGCAGTGATAATATTTGGGGTGTGGATGAGTACACACAATGATGGTTGCAGAAGG 379
Query 121 TCACTTACATTTCCAGTCATAGCTCTTGGTGGTTTCATCTTCTTGATATCCATAATCGGA 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TCACTTACATTTCCAGTTATAGCTCTTGGTGGTTTCATCTTCTTGATATCCATAATCGGA 439
Query 181 TTTCTTGGCGCGTGCAAGAGAAGTGTGGCGCTTCTTTGGATTTATCTTGCTGTCCTCCTG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 440 TTTCTTGGCGCGTGCAAGAGAAGTGTGGCGCTTCTTTGGATTTATCTTGCCGTGCTCCTG 499
Query 241 ATCGTTTTGATCGCGATTCTTGTCTTTACCGTACTAGCGTTCATTGTAACAAACAATGGT 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 500 ATCGTTTTGATCGCGATTCTTGTCTTTACCGTACTGGCGTTCATTGTAACAAACAATGGT 559
Query 301 TCTGGCCATACTAACCCTGGTTTAAGGTACAAAGAGTATAAGCTGAATGATTACAGCTCA 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 560 TCTGGCCATACTAACCCTGGTTTAAGGTACAAGGAGTATAAGCTGAATGATTACAGCTCA 619
Query 361 TGGTTTCTAAAACAGCTCAACAACACCAGTAACTGGATAAGACTAAAGAGTTGTCTTGTT 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TGGTTTCTAAAACAGCTTAACAACACCAGTAACTGGATAAGACTAAAGAGTTGTCTTGTT 679
Query 421 AAATCCGAGCAATGTAGGAAGCTTTCCAAGAAATACAAGACCATCAAACAATTAAAATCC 480
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 680 AAATCCGAGCAATGTCGGAAGCTTTCCAAGAAATACAAGACCATCAAACAGTTGAAATCC 739
Query 481 GCAGAATTAACCCCGATAGAAGCTGGATGTTGTCGACCACCATCTGAGTGTGGTTATCCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GCAGAATTAACCCCGATAGAAGCTGGATGTTGTCGACCACCATCTGAGTGTGGTTATCCT 799
Query 541 GCGGTGAATGCTTCTTACTATGACTTGAGCTTTCATTCGATAAGTTCTAACAAAGATTGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GCGGTGAATGCTTCTTACTATGACTTGAGCTTTCATTCGATAAGTTCTAACAAAGATTGT 859
Query 601 AAGCTCTACAAGAATTTGAGGACCATCAAGTGCTACAATTGTGATTCTTGCAAAGCTGGA 660
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 860 AAGCTTTACAAGAATTTGAGGACTATCAAGTGCTACAACTGTGATTCTTGCAAAGCTGGA 919
Query 661 GTAGCTCAGTACATGAAAACCGAGTGGCGACTTGTTGCGATCTTCAATGTGGTTCTGTTT 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 920 GTTGCTCAGTACATGAAAACCGAGTGGCGACTTGTTGCGATCTTCAATGTGGTCCTGTTT 979
Query 721 GTTGTCTTGGTAAGCTATCTT 741
||||||||| |||||| ||||
Sbjct 980 GTTGTCTTGATAAGCTCTCTT 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5