BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907077
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa... 460 5e-129
> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70)
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116
Score = 460 bits (249), Expect = 5e-129
Identities = 462/554 (83%), Gaps = 57/554 (10%)
Strand=Plus/Plus
Query 1 ATGTTAAAGGATTTCTTCGATGGCAAGGAACCCAACAAAGGAACTAACCCTGATGAGGTT 60
|||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
Sbjct 1217 ATGTTAAAGGATTTCTTCGACGGCAAGGAACCCAGCAAAGGGACTAACCCTGATGAGGCT 1276
Query 61 TTGGCCTAT-ACAACCGCCGTCCAAGGTGGAGTATTAAGTGGTGAAGGTGGAGAAGAAAC 119
|||||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 GTGGCCTATGGC-GCCGCGGTCCAAGGTGGAGTATTAAGTGGTGAAGGTGGAGAAGAAA- 1334
Query 120 GCAAAACCTAAATTTATTGAAAACAAATATTTTGCTACTTGATGTTGCGCCTTTGCA-CC 178
| | | ||| |||| | || || |||||||||||||||||| | |
Sbjct 1335 -C---A-C-AAA-ATATT-----C---TA-----CTGCTTGATGTTGCGCCTTTG-AGTC 1373
Query 179 TCGGTATTGACACTGTCGGAGGCGTGATGACAAACATTATT-C------CTC-G-GATCC 229
|||||||||| |||||||||||||||||||||||||||||| | | | | |||||
Sbjct 1374 TCGGTATTGAAACTGTCGGAGGCGTGATGACAAACATTATTCCGAGGAACACGGTGATCC 1433
Query 230 CAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTTACTATCA 289
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1434 CAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGACTATCA 1493
Query 290 ACGTCTATGAA---GAGATAAGCATGACGAAAGATAACCCCGAGCTCGGAAATTTCCAGC 346
||||||| ||| |||| |||||||||||||||||||| |||||| ||||| ||| | |
Sbjct 1494 ACGTCTACGAAGGCGAGAGAAGCATGACGAAAGATAACCGCGAGCTTGGAAAATTCGATC 1553
Query 347 TCACCGGCCTTCTTCCTGCACCTCGCAAGGAACAGTTTTTCATGGGGGTGCCACAGATGG 406
|||| ||| ||||||||||| | | ||| ||| ||||||||||| |
Sbjct 1554 TCACAGGCATTCTTCCTGCA---C-C------CAG--------GGGAGTGCCACAGATTG 1595
Query 407 AGGTGACTTTCGAAGTGGACGCAAATGGGATTCTGCAAGTGAACA-CCGAAGACAAAGTT 465
||||||||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||
Sbjct 1596 AGGTGACTTTCGAAGTGGACGCAAATGGGATCCTGCAGGTGAA-AGCTGAAGACAAAGTT 1654
Query 466 CCAAAGATGTCACAGTCAATTACAATAACGAACGATAAAGGTCGTTTGACAGGAGAAGAG 525
| |||| |||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1655 GCTAAGACGTCACAATCGATTACAATAACGAACGATAAAGGTCGTTTGACAGAAGAAGAG 1714
Query 526 ATTGATGAAATGAT 539
||||| ||||||||
Sbjct 1715 ATTGAGGAAATGAT 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26624097910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5