BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907080
Length=189
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63290.1 | Symbols: | Aldolase-type TIM barrel family prote... 287 3e-77
AT3G01850.1 | Symbols: | Aldolase-type TIM barrel family prote... 254 3e-67
> AT1G63290.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr1:23471849-23473639 REVERSE LENGTH=979
Length=979
Score = 287 bits (155), Expect = 3e-77
Identities = 179/190 (94%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 1 ATGGCTAAAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGG 60
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 293 ATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAGAGAATTGG 352
Query 61 CAAGAACTTGTGGAA-AATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCC 119
||||||||||| ||| || |||||| ||| ||||||||||||||||||||||||||||||
Sbjct 353 CAAGAACTTGT-GAAGAAGATTAAGGCTGCTGGGATGAGGCCAGGTGTGGCTCTAAAGCC 411
Query 120 TGGAACACCTGTTGAACAAGTCTATCCTCTGGTATTGAAGGTACAAATCCGGTTGAAATG 179
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 412 TGGAACACCTGTTGAACAAGTCTATCCTCTGGTC--GAAGGTACAAATCCGGTCGAAATG 469
Query 180 GTTCTTGTGA 189
||||||||||
Sbjct 470 GTTCTTGTGA 479
> AT3G01850.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr3:299987-302038 REVERSE LENGTH=1056
Length=1056
Score = 254 bits (137), Expect = 3e-67
Identities = 172/189 (91%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAAAGCTGGGGCGTCTGGTTTCACATTGCACGTTGAGGTGGCCAAAGAGAATTGG 60
||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| ||||||
Sbjct 289 ATGGCTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATAATTGG 348
Query 61 CAAGAACTTGTGGAAAATATTAAGTCTGTTGGGATGAGGCCAGGTGTGGCTCTAAAGCCT 120
||| ||||||| || || ||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 349 CAACAACTTGTCGAGAAGATTAAGTCTACTGGGATGAGACCAGGCGTGGCTCTAAAGCCT 408
Query 121 GGAACACCTGTTGAACAAGTCTATCCTCTGGTATTGAAGGTACAAATCCGGTTGAAATGG 180
|||||||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||
Sbjct 409 GGAACACCTGTTGAACAAGTCTATCCTCTGGT-T-GAAGGGACAACTCCGGTTGAAATGG 466
Query 181 TTCTTGTGA 189
|||||||||
Sbjct 467 TTCTTGTGA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8350024266
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5