BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907102
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63206.1 | Symbols: | Cystatin/monellin superfamily protein... 610 8e-174
> AT1G63206.1 | Symbols: | Cystatin/monellin superfamily protein
| chr1:23439642-23440931 FORWARD LENGTH=833
Length=833
Score = 610 bits (330), Expect = 8e-174
Identities = 522/610 (86%), Gaps = 32/610 (5%)
Strand=Plus/Plus
Query 34 ATGCTGGGACGTGTGTATCTGAGTTACGAGGTTGGTTCTTTTCCTAAGAATCTGATTCCT 93
|||| |||||||||||||||| |||||||||||||||| |||||| |||| ||||||||
Sbjct 1 ATGCCGGGACGTGTGTATCTGTGTTACGAGGTTGGTTCGTTTCCTGTGAATTTGATTCCT 60
Query 94 CCGCATATTCGACGGGACGAGAATAAAGAGCCTAAGTACACGACACA-GCAAGAGTGTGT 152
|||||||| ||| |||||||||| |||||||||| |||||||| ||| | ||||||||||
Sbjct 61 CCGCATATACGATGGGACGAGAAGAAAGAGCCTATGTACACGAGACATG-AAGAGTGTGT 119
Query 153 TATGATGAGAAGACAAGTCAGGAAGAGCAAGGGGTTCGACATCGATTTCACACAGTTCCG 212
|||||||||||||||||| | |||||||||||| || |||||||||||||||||||| ||
Sbjct 120 TATGATGAGAAGACAAGTGAAGAAGAGCAAGGGTTTTGACATCGATTTCACACAGTTTCG 179
Query 213 CTCTGTTTTCAATTACCGCCCTGTTAATTTTGAC--T---G--TA-AA-GAGTATTCTTT 263
|||||| |||||||||||||||||| |||| ||| | | || || |||||||||||
Sbjct 180 CTCTGTGTTCAATTACCGCCCTGTTGATTTAGACGATTTAGACTATAAAGAGTATTCTTT 239
Query 264 GGCACCAGAAACCACTAGGGGGTTACTCGAGAGGCTGTCTCGAAACTCCCTTAAGAACTA 323
|||| |||||||||||| || ||||||| |||||||||||| ||||||||||||||||||
Sbjct 240 GGCAACAGAAACCACTACGGAGTTACTCAAGAGGCTGTCTCAAAACTCCCTTAAGAACTA 299
Query 324 CAACAAAGAATGGTTTACAGAATATGAATTTCTCAATGTTGTCAAAGCCAATTCTTACAT 383
||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 300 CAATTCAGAATTGTTTACAGAATATGAATTTCTCAAGGTTGTCAAAGCCAATACTTACAT 359
Query 384 GTGTTCTGGGA-T---A-A-TGTTTTTCATAACCTTTGAGGTTCGAGATCCTTACGACAA 437
|||| ||||| | | | ||| ||||||||||||||||||| ||||||||||||| ||
Sbjct 360 GTGTACTGGGCCTGGTAGAATGTATTTCATAACCTTTGAGGTTAGAGATCCTTACGATAA 419
Query 438 CCTGGC-AAAGCTCTTCCAAGCTAGGGTCCGCTATTATTATGATGTTACAGATGACTACA 496
|||| | ||||||||| ||| ||||||||||| || ||||||||||||| ||||||||||
Sbjct 420 CCTG-CTAAAGCTCTTTCAAACTAGGGTCCGCCATGATTATGATGTTACGGATGACTACA 478
Query 497 TATTATGCAGACCAAAACCCAATCAGAAAGGGCAGAT---TT---T-TT--ATGAATATC 547
|||||||||||||||| ||| ||||||||| || || || | || | || | |
Sbjct 479 TATTATGCAGACCAAAGCCCTATCAGAAAGT-CAAATGCGTTGGATCTTCCAAGAC-A-C 535
Query 548 ATGTTGTGCTTGGCATAGGAGCTTATGCGATATCTAATGCGGTTTGGGTGGTGAGCAGTG 607
|| ||||||||||||| ||||||||||||| |||| ||||| ||||||||||||
Sbjct 536 ATAAAA-GCTTGGCATAGGACCTTATGCGATATCCAATGTGGTTTTCTTGGTGAGCAGTG 594
Query 608 AGCTAAATTA 617
||||||||||
Sbjct 595 AGCTAAATTA 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5