BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907103
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63205.1 | Symbols: | Cystatin/monellin superfamily protein... 861 0.0
> AT1G63205.1 | Symbols: | Cystatin/monellin superfamily protein
| chr1:23437689-23438677 REVERSE LENGTH=570
Length=570
Score = 861 bits (466), Expect = 0.0
Identities = 538/572 (94%), Gaps = 7/572 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGAATCATTCGAAGGCTGGACTTCATGGGTCGAAGATGCATATTTGCTATGTACA 60
|||| |||||||||||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 1 ATGGGTGAATCATTCGAAGGCTGGAATGCGTGGCTCGAAGATGCATATTTGCTATGTACA 60
Query 61 CCTGAAGACCCTGAGTGCTTGAAGCATCACTATATCACACGAACTGAGAAAGACGAGCCT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTGAAGATCCTGAGTGCTTGAAGCATCACTATATCACACGAACTGAGAAAGACGAGCCT 120
Query 121 CAATACACTGTAGATGAAGAAATTTCCATGATGAACGAACAAATCACAAAGAGCGAGGGG 180
|| ||||| ||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 121 CAGTACACAGTAGATGAAGAAATTGCTATGATGAACGAACAAATCACGAAGAGCGAGGGG 180
Query 181 TTCGATATTGATTTCTCGTTGTTCCGATGTCTGTTCAACTACCATCTTGTTGACCCCAAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TTCGATATTGATTTCTCGTTGTTCCGATGTCTGTTCAACTACCATCTTGTTGACCCCGAT 240
Query 241 GATTACGATTTCCTTGAAGATGAAACA-ACAGAAACCAACGGGGATTTCATGAAGAGGCT 299
|||| |||||||||||| |||||| || | |||||||||||||||||||||||||||| |
Sbjct 241 GATTTCGATTTCCTTGATGATGAATCAGA-AGAAACCAACGGGGATTTCATGAAGAGGTT 299
Query 300 CTCTCAAGAATCCCTTAAGCGCTACAATGACGAATGTGGTAC--A-AAATTTGAATTTCT 356
||||||||||| |||||||| |||||||||||||||||||| | |||| ||||||||
Sbjct 300 TTCTCAAGAATCTCTTAAGCGTTACAATGACGAATGTGGTACGAACAAATATGAATTTCA 359
Query 357 CGAGGTTGTCAAAGCCAATTTTCACGGATC-TGTTGGATATATGTTTCTCATCACGTTTC 415
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 360 CGAGGTTGTCAAAGCCAATTTTCACGGATCTTG-TGGATATATGTTTCTCATCACGTTTC 418
Query 416 AAGTGTTTGATCCATCTGATGACCAGGAAAAAACCTTCCAAGCTAGGATCCGTTACACTA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGTGTTTGATCCATCTGATGACCAGGAAAAAACCTTCCAAGCTAGGATCCGTTACACTA 478
Query 476 CACATTACCCGACTGAATTCGTCTTTTGTAGGCCGAAACCCAATCCAGAAGTTGACTCTG 535
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 CACATTACCCCACTGAATTCGTCTTTTGTAGGCCGAAACCGAATCCAGAAGTTGACTCTC 538
Query 536 GTGAAACTTCCAAGGAAGATGTCAAAGGTTGA 567
||||||| || ||||||||||||||||||||
Sbjct 539 ATGAAACTGCCGAGGAAGATGTCAAAGGTTGA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5