BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907104
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63205.1 | Symbols: | Cystatin/monellin superfamily protein... 612 1e-174
> AT1G63205.1 | Symbols: | Cystatin/monellin superfamily protein
| chr1:23437689-23438677 REVERSE LENGTH=570
Length=570
Score = 612 bits (331), Expect = 1e-174
Identities = 497/574 (87%), Gaps = 23/574 (4%)
Strand=Plus/Plus
Query 1 ATGGGTGAAACATTCGAAGGCTGGACTTCTTGGGTCGAAGATGCATATTTGCTATGTACA 60
||||||||| ||||||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 1 ATGGGTGAATCATTCGAAGGCTGGAATGCGTGGCTCGAAGATGCATATTTGCTATGTACA 60
Query 61 CCTGAAGATCCTGAGTGCTTGAAGCATCACTATATCACACGAACCGAGAAAGACGAGCCT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CCTGAAGATCCTGAGTGCTTGAAGCATCACTATATCACACGAACTGAGAAAGACGAGCCT 120
Query 121 CAATACACTGTAGAAGAAGAAATTGCTATGATGAACGAACAAATCGA-GAAAAGCGAGGG 179
|| ||||| ||||| |||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 121 CAGTACACAGTAGATGAAGAAATTGCTATGATGAACGAACAAATC-ACGAAGAGCGAGGG 179
Query 180 GTTCGATATTGATTTCTCGTTGTTCCGATGTCTGTTCAACTACCATCTTGTTGACCCCGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTCGATATTGATTTCTCGTTGTTCCGATGTCTGTTCAACTACCATCTTGTTGACCCCGA 239
Query 240 TGATACCGATTTCGTTGAGGA-GC--CAGAA-A--CCAATGGGGATTTAATGAAGAGGCT 293
|||| ||||||| |||| || | ||||| | |||| |||||||| ||||||||| |
Sbjct 240 TGATTTCGATTTCCTTGATGATGAATCAGAAGAAACCAACGGGGATTTCATGAAGAGGTT 299
Query 294 TTCTCAAGAATCCCTTAA-CGTCTTTAATAAGGAG-GAGGGCACGGA-A--T-TCGAATT 347
|||||||||||| ||||| ||| | ||| | || | || ||| | | | | |||||
Sbjct 300 TTCTCAAGAATCTCTTAAGCGT-TACAATGACGAATGTGGT-ACGAACAAATAT-GAATT 356
Query 348 TGTCAAAGTTGTCAAAGCCAATTTCCACT-ATAGTGCTGGGTTTATGTTTCTCATAACAT 406
| | | ||||||||||||||||| ||| || || ||| | |||||||||||| || |
Sbjct 357 TCACGAGGTTGTCAAAGCCAATTTTCACGGATCTTG-TGGATATATGTTTCTCATCACGT 415
Query 407 TTGAAGTGTTGGATCCATCTGATAACCAGGAAAAA-CTCTTCCAAGCTAGGGTTCGTTAC 465
|| ||||||| |||||||||||| ||||||||||| | ||||||||||||| | ||||||
Sbjct 416 TTCAAGTGTTTGATCCATCTGATGACCAGGAAAAAAC-CTTCCAAGCTAGGATCCGTTAC 474
Query 466 TCTACACGTTTCCCGGCTGAATACGTCTTTTGTAGGCCAAAACCCGA-TCCAGAAGTTGA 524
|||||| || ||| |||||| ||||||||||||||| ||||| || ||||||||||||
Sbjct 475 ACTACACATTACCCCACTGAATTCGTCTTTTGTAGGCCGAAACC-GAATCCAGAAGTTGA 533
Query 525 CTCTGATGAAACTTCCGAGGAAGATGTCAATGGT 558
|||| |||||||| |||||||||||||||| |||
Sbjct 534 CTCTCATGAAACTGCCGAGGAAGATGTCAAAGGT 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5