BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907117
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12740.2 | Symbols: CYP87A2 | cytochrome P450, family 87, su... 590 1e-167
> AT1G12740.2 | Symbols: CYP87A2 | cytochrome P450, family 87,
subfamily A, polypeptide 2 | chr1:4342282-4344857 FORWARD LENGTH=1905
Length=1905
Score = 590 bits (319), Expect = 1e-167
Identities = 631/774 (82%), Gaps = 51/774 (7%)
Strand=Plus/Plus
Query 1 CAACAGACCCTGGTTTTAGTTATTTTGTGTTCCAA-CAAGAAGGTA-GATGTTTCCAGTG 58
||||||| ||| ||| |||||||||||||| || |||| ||| | | ||||||||| |
Sbjct 446 CAACAGATGCTGATTTGAGTTATTTTGTGTT-TAACCAAG-AGGGACGTTGTTTCCAGAG 503
Query 59 TTGGTATCCTGACACTTTCACTGAGATCTTTGGAAAAGCAGAATGTGGGATCATTACATG 118
||||||||| |||||||| || | |||||||| ||| |||||||||| ||||||||||
Sbjct 504 TTGGTATCCAGACACTTTTACACACATCTTTGG-GAAGAAGAATGTGGGTTCATTACATG 562
Query 119 GGTTCATGCATAAGTACCTCAAGCACATGGTCTTGA--GTC--T----AT-TTGG-C-CA 167
| |||||| | |||||||| || ||||||| |||| || | || ||| | ||
Sbjct 563 GTTTCATGTACAAGTACCTTAAAAACATGGTTTTGACTCTCTTTGGCCATGATGGTCTCA 622
Query 168 TGAA-A-G--T-CTCAAG-A-AGATG-CTTCC--TGAA-A--TT-GAAC-AAAGT-AACT 211
||| | | | |||||| | | ||| || || | || | || || | || || |
Sbjct 623 AGAAGATGCTTCCTCAAGTAGAAATGACTGCCAAT-AAGAGGTTGGAGCTTTGGTCAAAT 681
Query 212 CAA-A-T--G-AG--CTGAAAGATTCAGTGGCAAGCTTGATATTTGATCTCACCGCGAAA 264
||| | | | || || |||||| || |||||| ||||||||||||||||||||||
Sbjct 682 CAAGATTCAGTAGAACTCAAAGATGCAACCGCAAGCATGATATTTGATCTCACCGCGAAG 741
Query 265 AAGTTGATAAGCCATGATACAGAGAAGTCCTCAGAGAATCTAAGGG-AATACTTTGTTGC 323
|||||||| ||||||||| |||| ||||| |||||||||||||||| || ||||||||||
Sbjct 742 AAGTTGATCAGCCATGATCCAGACAAGTCATCAGAGAATCTAAGGGCAA-ACTTTGTTGC 800
Query 324 GTTCATCCACGGTTTGATCTCCTTCCCTATTGACATCCCAGGGACAGCTTATCACAAGTG 383
||||| || || |||||||| |||||| |||| |||||||| |||||||||||||| ||
Sbjct 801 TTTCATACAGGGATTGATCTCTTTCCCTTTTGATATCCCAGGCACAGCTTATCACAAATG 860
Query 384 CCTAAAGGGTAGGG-AAAGTGCGATGAAAATGTTGAGGAATATGCTTCAAGAGCGGTGTG 442
||| ||||||||| |||| || |||||||||||||||||||||||||||||| || |||
Sbjct 861 TCTACAGGGTAGGGCAAAG-GCAATGAAAATGTTGAGGAATATGCTTCAAGAGAGGCGTG 919
Query 443 AGAAGCCAAGGGAGAATCCGAGTGACTTCTTTGATTATGTCATCGAAGAGCTTAAGAAAG 502
|||| || || ||||||| ||||| |||||||||||||| || |||||| || ||||||
Sbjct 920 AGAACCCTCGGAAGAATCCAAGTGATTTCTTTGATTATGTTATTGAAGAGATTCAGAAAG 979
Query 503 AAGGCACAATTCTGACAGAAGCA-ATTGCACTAGACTTGATGTTTGCCTTGCTTTTTGCT 561
|||| |||||||||||||||| | |||||||| || |||||||||| |||||| |||||
Sbjct 980 AAGGGACAATTCTGACAGAAG-AGATTGCACTGGATTTGATGTTTGTCTTGCTATTTGCC 1038
Query 562 AGCTTCGAAACAACTTCTCTTT-CTTTAACATTAGCTATCAAGTTCCTCTCAGACAACCC 620
||||| |||||||||||| || || |||| |||||||||||||| |||||||| ||||
Sbjct 1039 AGCTTTGAAACAACTTCT-TTGGCTCTAACTTTAGCTATCAAGTTTCTCTCAGATGACCC 1097
Query 621 TTCAGTCCTAAAACGTCTAACGGAAGAGCATGAGGA-AATTTTGGGAAACCGTGAAGATG 679
| ||||||||| ||| |||||||||| |||||| | |||| || ||||||| |||||||
Sbjct 1098 TGAAGTCCTAAAGCGTTTAACGGAAGAACATGAG-ACAATTCTGAGAAACCGGGAAGATG 1156
Query 680 CTGACTCTGGACTTACATGGAAAGAATACAAATCAATGACTATACACATTTCAG 733
| |||||||||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct 1157 CAGACTCTGGACTTACATGGGAAGAATACAAGTCAATGACT-TACACATTTCAG 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5