BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907121
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49440.1 | Symbols: | unknown protein; Has 30201 Blast hits... 340 5e-93
> AT5G49440.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20048239-20049597
FORWARD LENGTH=1359
Length=1359
Score = 340 bits (184), Expect = 5e-93
Identities = 359/439 (82%), Gaps = 29/439 (7%)
Strand=Plus/Minus
Query 8 ATCT-GTTCTCTGCGTCTCCGGTCACGGTGGTCTT-T-ACCGGTGGCCGGAGAGGGCTtc 64
|||| | ||| ||| |||||||||||||| | ||| | ||||||||||||||||||||||
Sbjct 1259 ATCTAGATCTGTGCCTCTCCGGTCACGGT-G-CTTCTCACCGGTGGCCGGAGAGGGCTTC 1202
Query 65 tctctcctctctttttctctgt-tt-tctcctcct-cctcGTC-TT-GCAGCTCCGGAGA 119
|| ||| |||| ||| |||| | || ||||||| | |||| || || | |||||||| |
Sbjct 1201 TCCCTCTTCTCCTTTCCTCTCTCTTATCTCCTC-TGCCTC-TCCTTTGAAGCTCCGGTGG 1144
Query 120 TGCTCAGATTATACGGCTTGCTCTTCGTCTCTTGTTGGTGGTAGAGCAGCGAGTGGCCAC 179
|| ||| || | ||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1143 TGTTCAAATC-T--GGCTTGCTCTTCGTCTCTTGTTGGTGGTAT-GCGGCGAGTGGTCAC 1088
Query 180 GCACG-ATGCAAAGGACGTGTGGTGTGTGTCTCTCTGTCCTA-GGTTGTGG-TTTGATGC 236
||||| | |||||||||||| || |||| |||||| || || || |||| |||||||
Sbjct 1087 GCACGGA-GCAAAGGACGTGCGGCGTGTCTCTCTCCGTT-TAAGGCAGTGGCTTTGATGA 1030
Query 237 GGCGACTGTAGCAGCAGTGCGGCTCCTAACGGCGGGACAAACTTCCAGATCTGAGAAACC 296
| |||||||||| | |||||||||||| || |||||| | ||||||||||||| |||
Sbjct 1029 GACGACTGTAGCGGTTGTGCGGCTCCTATCGACGGGACCATCTTCCAGATCTGATAAATT 970
Query 297 GGTGGTGCATCACCGTGTTGCT-CTAGACATCGCCGTTCCTCTTGTAATTTGGGCACTAC 355
||||||||||| || |||| || | |||||||| ||||| |||| | |||||||||| ||
Sbjct 969 GGTGGTGCATCGCCATGTTTCTTC-AGACATCGTCGTTCTTCTT-TGATTTGGGCACAAC 912
Query 356 A-TGGAGCTTTCGGTGTGACAAATCTTCTCTTCTCGGGTCTCTCCACCT-TAGTTTTCTC 413
|| || |||||||||| || |||||||||||||||||||||| |||| | |||||||
Sbjct 911 GGTG-AGTTTTCGGTGTGGCAGATCTTCTCTTCTCGGGTCTCTCTACCTGTT-TTTTCTC 854
Query 414 C-GCTCCGGTGTTGGTGTG 431
| |||| |||| |||||||
Sbjct 853 CAGCTCTGGTGATGGTGTG 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20660044839
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5