BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907129

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G63040.1 | Symbols:  | a pseudogene member of the DREB subfa...   928    0.0  
  AT4G27120.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: DDRGK dom...   134    2e-30


> AT1G63040.1 | Symbols:  | a pseudogene member of the DREB subfamily 
A-4 of ERF/AP2 transcription factor family. The translated 
product contains one AP2 domain. There are 17 members 
in this subfamily including TINY. | chr1:23371327-23372073 FORWARD 
LENGTH=747
Length=747

 Score =  928 bits (502),  Expect = 0.0
 Identities = 602/649 (93%), Gaps = 11/649 (2%)
 Strand=Plus/Plus

Query  109  AGCCTCTCTGACTCTGTCACGTGTGAAAACCCTTATCCACTTGATAC--T-A-T-C-ACT  162
            |||||||||||||||| ||||||||||||||||| ||||||||||||  | | | | |||
Sbjct  100  AGCCTCTCTGACTCTGCCACGTGTGAAAACCCTTGTCCACTTGATACTATCACTACTACT  159

Query  163  -C--CTACTGTTTCTTTTGCGGCTCCTACTTCTACTACAAGTGGTAATGATATTAATACT  219
             |  ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct  160  ACTACTACTGTTTGTTTTGCGGCTCCTTCTTCTACTGCAAGTGGTAATGATATTAATACT  219

Query  220  TTAATGGCCACTGACGCCGACATCTCTCGCCGGAAAAAGCGTCCGGTTTACCGGGGAATT  279
            ||||||||||||||| |||||||||||||||||||||||  ||||||||| |||||||||
Sbjct  220  TTAATGGCCACTGACACCGACATCTCTCGCCGGAAAAAGAATCCGGTTTATCGGGGAATT  279

Query  280  CGTTGCCGGAGTGGAAAATGGGTCTCCGAGATCCGAGAGCCTAAGAAGACTACACGTGTT  339
            ||||| ||||||||||||||||| || || |||||||||||||| |||||||||||||| 
Sbjct  280  CGTTGTCGGAGTGGAAAATGGGTGTCTGAAATCCGAGAGCCTAAAAAGACTACACGTGTC  339

Query  340  TGGCTTGGAACTTATACGACGCCGGAGATGGCTGCGGCCGCCTATGACGTGGCGGCTTTA  399
            |||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  340  TGGCTTGGGACTTATCCGACGCCGGAGATGGCTGCTGCCGCATATGACGTGGCGGCGTTA  399

Query  400  GCTCTTAAAGGTGGAGACAC-CGTCTTGAACTTCCCGGATTCCGTGGGATCTTACCCCAG  458
            |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| 
Sbjct  400  GCTCTTAAAGGTGGAGACACTC-TCTTGAACTTCCCGGATTCCCTGGGATCTTACCCCAT  458

Query  459  TCCCCTTTCCTCTTCCGCAGCTCATATCAGATGCGCTGCAGCCGCAGCTGCTGCGGCTAG  518
            |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct  459  TCCCCTTTCCTCTTCCGCAGCTCATATCAGATGCGCTGCAGCTGCGGCTGCTGCGACTAG  518

Query  519  GGGTGCGGCTGCAGCGGCCGTGAAGGGAGGTGAAAAGAAGGAAGAGGAAGTTTGTGATAC  578
            ||||||||||| |||||||||||||| |||| |||||||||||||  |||||| ||||||
Sbjct  519  GGGTGCGGCTGGAGCGGCCGTGAAGGTAGGTCAAAAGAAGGAAGATAAAGTTTATGATAC  578

Query  579  GGCGGGATCTTCAACTATGGGGTTTGTGGATGAAGAAGAGCTATTGAACATGCCTGGTTT  638
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  579  GGCGGAATCTTCAACTATGGGGTTTGTGGATGAAGAAGAGCTATTGAACATGCCTGGTTT  638

Query  639  GCTAGCGGATATGGCCAAAGGGATGATGGTGGCTCCTCCGTGGATGGGATCTCCTCCGTC  698
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct  639  GCTAGCGGATATGGCCAAAGGGATGATGGTGGCTCCACCGTGGATGGGATCTCCACCGTC  698

Query  699  AGATGATTCGCCGGAAAATTCTGATGGAGAGAGCTTGTGGAGCTATTGA  747
            |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  699  AGATGATTCGCCAGAGAATTCTGATGGAGAGAGCTTGTGGAGCTATTGA  747


> AT4G27120.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: DDRGK domain 
(InterPro:IPR019153); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa 
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr4:13601970-13604339 
REVERSE LENGTH=1249
Length=1249

 Score =  134 bits (72),  Expect = 2e-30
 Identities = 82/87 (94%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGATGAAGATGAAGCTGGTGGATCCCAATCCTGAGCATCAAAGAAGAAAGAGAATA  60
            |||||||||||||||||||||||||| | ||| || |||||||||||||||||||||| |
Sbjct  354  ATGAAGATGAAGATGAAGCTGGTGGAACTCAAGCCAGAGCATCAAAGAAGAAAGAGAAGA  413

Query  61   AGCGACAAGAGCGGGAAGCACAAAGAC  87
            |||||||||||||||||||||||||||
Sbjct  414  AGCGACAAGAGCGGGAAGCACAAAGAC  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36269054134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5