BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907129 Length=747 Score E Sequences producing significant alignments: (Bits) Value AT1G63040.1 | Symbols: | a pseudogene member of the DREB subfa... 928 0.0 AT4G27120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: DDRGK dom... 134 2e-30 > AT1G63040.1 | Symbols: | a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY. | chr1:23371327-23372073 FORWARD LENGTH=747 Length=747 Score = 928 bits (502), Expect = 0.0 Identities = 602/649 (93%), Gaps = 11/649 (2%) Strand=Plus/Plus Query 109 AGCCTCTCTGACTCTGTCACGTGTGAAAACCCTTATCCACTTGATAC--T-A-T-C-ACT 162 |||||||||||||||| ||||||||||||||||| |||||||||||| | | | | ||| Sbjct 100 AGCCTCTCTGACTCTGCCACGTGTGAAAACCCTTGTCCACTTGATACTATCACTACTACT 159 Query 163 -C--CTACTGTTTCTTTTGCGGCTCCTACTTCTACTACAAGTGGTAATGATATTAATACT 219 | ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 160 ACTACTACTGTTTGTTTTGCGGCTCCTTCTTCTACTGCAAGTGGTAATGATATTAATACT 219 Query 220 TTAATGGCCACTGACGCCGACATCTCTCGCCGGAAAAAGCGTCCGGTTTACCGGGGAATT 279 ||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 220 TTAATGGCCACTGACACCGACATCTCTCGCCGGAAAAAGAATCCGGTTTATCGGGGAATT 279 Query 280 CGTTGCCGGAGTGGAAAATGGGTCTCCGAGATCCGAGAGCCTAAGAAGACTACACGTGTT 339 ||||| ||||||||||||||||| || || |||||||||||||| |||||||||||||| Sbjct 280 CGTTGTCGGAGTGGAAAATGGGTGTCTGAAATCCGAGAGCCTAAAAAGACTACACGTGTC 339 Query 340 TGGCTTGGAACTTATACGACGCCGGAGATGGCTGCGGCCGCCTATGACGTGGCGGCTTTA 399 |||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 340 TGGCTTGGGACTTATCCGACGCCGGAGATGGCTGCTGCCGCATATGACGTGGCGGCGTTA 399 Query 400 GCTCTTAAAGGTGGAGACAC-CGTCTTGAACTTCCCGGATTCCGTGGGATCTTACCCCAG 458 |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| Sbjct 400 GCTCTTAAAGGTGGAGACACTC-TCTTGAACTTCCCGGATTCCCTGGGATCTTACCCCAT 458 Query 459 TCCCCTTTCCTCTTCCGCAGCTCATATCAGATGCGCTGCAGCCGCAGCTGCTGCGGCTAG 518 |||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| Sbjct 459 TCCCCTTTCCTCTTCCGCAGCTCATATCAGATGCGCTGCAGCTGCGGCTGCTGCGACTAG 518 Query 519 GGGTGCGGCTGCAGCGGCCGTGAAGGGAGGTGAAAAGAAGGAAGAGGAAGTTTGTGATAC 578 ||||||||||| |||||||||||||| |||| ||||||||||||| |||||| |||||| Sbjct 519 GGGTGCGGCTGGAGCGGCCGTGAAGGTAGGTCAAAAGAAGGAAGATAAAGTTTATGATAC 578 Query 579 GGCGGGATCTTCAACTATGGGGTTTGTGGATGAAGAAGAGCTATTGAACATGCCTGGTTT 638 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 GGCGGAATCTTCAACTATGGGGTTTGTGGATGAAGAAGAGCTATTGAACATGCCTGGTTT 638 Query 639 GCTAGCGGATATGGCCAAAGGGATGATGGTGGCTCCTCCGTGGATGGGATCTCCTCCGTC 698 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 639 GCTAGCGGATATGGCCAAAGGGATGATGGTGGCTCCACCGTGGATGGGATCTCCACCGTC 698 Query 699 AGATGATTCGCCGGAAAATTCTGATGGAGAGAGCTTGTGGAGCTATTGA 747 |||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 699 AGATGATTCGCCAGAGAATTCTGATGGAGAGAGCTTGTGGAGCTATTGA 747 > AT4G27120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: DDRGK domain (InterPro:IPR019153); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13601970-13604339 REVERSE LENGTH=1249 Length=1249 Score = 134 bits (72), Expect = 2e-30 Identities = 82/87 (94%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1 ATGAAGATGAAGATGAAGCTGGTGGATCCCAATCCTGAGCATCAAAGAAGAAAGAGAATA 60 |||||||||||||||||||||||||| | ||| || |||||||||||||||||||||| | Sbjct 354 ATGAAGATGAAGATGAAGCTGGTGGAACTCAAGCCAGAGCATCAAAGAAGAAAGAGAAGA 413 Query 61 AGCGACAAGAGCGGGAAGCACAAAGAC 87 ||||||||||||||||||||||||||| Sbjct 414 AGCGACAAGAGCGGGAAGCACAAAGAC 440 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36269054134 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5