BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907160

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G62820.1 | Symbols:  | Calcium-binding EF-hand family protei...   695    0.0  


> AT1G62820.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr1:23263671-23264349 REVERSE LENGTH=679
Length=679

 Score =  695 bits (376),  Expect = 0.0
 Identities = 420/442 (95%), Gaps = 0/442 (0%)
 Strand=Plus/Plus

Query  9    CAAGGATGGTTTGAGCGACGACCAAGTCTCATCAATGAAGGAAGCATTCACGCTCTTCGA  68
            |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  87   CAAGGATGGTTTGAGCAACGACCAAGTCTCATCAATGAAGGAAGCATTCATGCTATTCGA  146

Query  69   CACAGACGGCGACGGCAAAATCGCACCGTCGGAGCTCGGAATCTTAATGCGATCACTCGG  128
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  147  CACAGACGGCGACGGCAAAATCGCACCGTCGGAGCTCGGAATCTTAATGCGGTCACTCGG  206

Query  129  CGGCAATCCAACAGAATCACAACTTAAATCGATCATCGCGACGGAGAATCTCTCGTCTCC  188
            |||||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||
Sbjct  207  CGGCAATCCAACAGAATCACAACTCAAATCAATCATAACGACGGAGAATCTCTCGTCTCC  266

Query  189  GTTTGATTTCAATCGATTCATAGATCTAATGGCGAAACATCTGAAAACAGAACCGTTTGA  248
            ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct  267  GTTCGATTTCAATCGATTCCTAGATCTAATGGCGAAACATCTGAAAACAGAGCCGTTCGA  326

Query  249  TCGCCAGCTTCGTGATGCGTTCAAAGTACTCGATAAAGAAGGTACTGGATTCGTTGCTGT  308
            ||||||||||||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct  327  TCGCCAGCTTCGTGATGCGTTCAAAGTGCTTGACAAGGAAGGTACTGGATTCGTTGCTGT  386

Query  309  TGCAGATCTGAGGCATATACTTACGAGTATTGGTGAGAAATTGCAGCCGAGTGAATTCGA  368
             ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct  387  GGCAGATCTGAGACATATACTTACGAGTATCGGTGAGAAATTGCAGCCGAGTGAGTTTGA  446

Query  369  TGAGTGGATCAAAGAGGTTGATGTTGGATCTGATGGTAAGATCCGTTATGAGGATTTTAT  428
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  447  TGAGTGGATCAAAGAGGTTGATGTTGGATCTGATGGTAAGATCCGGTATGAGGATTTTAT  506

Query  429  TGCTAGAATGGTTGCTAAGTAA  450
            ||||||||||||||||||||||
Sbjct  507  TGCTAGAATGGTTGCTAAGTAA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5