BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907173 Length=453 Score E Sequences producing significant alignments: (Bits) Value AT1G62690.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 340 5e-93 > AT1G62690.1 | Symbols: | unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:23210441-23211389 REVERSE LENGTH=680 Length=680 Score = 340 bits (184), Expect = 5e-93 Identities = 382/469 (81%), Gaps = 47/469 (10%) Strand=Plus/Plus Query 1 ATGCGGTACAAGAGAAGATTTGTGACAGTTTACAGGGATTTTCCAGAAGGTTGTGGTGTT 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 100 ATGCGGTACAAGAGAAGATTTGTGACAGTTTACAGAGATTTTCCAGAAGGTTGTGGTGTT 159 Query 61 CCTTCAAAACATTTATCCAATGCTGATGA--GCTTTTGATGCAATCTAAGTT---TAAGG 115 |||||||||| | |||||||||||||||| | |||| |||||||||||||| ||||| Sbjct 160 CCTTCAAAACCTATATCCAATGCTGATGAAAG-TTTT-ATGCAATCTAAGTTCAATAAGG 217 Query 116 ATGGAATTGTCCTGCAGTCTCATGGAGACTTC-CTAGACATAACAAAGGAATCATCAAAT 174 ||||||||||| ||||| |||||| ||||||| | | | ||||||||||| ||||| ||| Sbjct 218 ATGGAATTGTCTTGCAGGCTCATGAAGACTTCTCAA-AGATAACAAAGGAGTCATCGAAT 276 Query 175 GATTCGGAGACCGAGACTTCTATAACTGAGGAATCGATTCTTGAATCTAATGGAA-GTGT 233 ||||||||||||||| ||||| |||||| || | || ||| || || ||| | || Sbjct 277 CATTCGGAGACCGAGAATTCTAGAACTGAAGA-T---TTGTTGGATG-AA-GGATCG-GT 329 Query 234 TCAAGAT-C-A-TC-AAGAGG-AG-GAAGGT-ATAGGAGAA-AGGGATGAAGAAGAGATG 285 || ||| | | | ||| | | || || | || || | || || |||| |||||| Sbjct 330 TCTTGATTCTAATGGAAGTGTTACTGATTGTCA-AG-AGGACAGAGA--AAGA-GAGATG 384 Query 286 AGCTCGGTAAAGAAGAGATGTTTGAGTTCACATAACTCAACCA-TGGAAGTTGAGACAGA 344 |||||||| |||||||||||||||||||||||||||| ||| | || ||||||||||||| Sbjct 385 AGCTCGGTGAAGAAGAGATGTTTGAGTTCACATAACTTAACAAGTG-AAGTTGAGACAGA 443 Query 345 TGTTGTGGATGTCTCAAAGAGAGTTATTGTTTCGGGACTCCCAGCTAAGTCGAAATGCCC 404 | | | || | | | | || |||| |||||| |||||||| |||||||||| Sbjct 444 -GA-G-G-AT-----A--G-G--T-ATAGTTTTGGGACTTGCAGCTAAGGCGAAATGCCC 488 Query 405 TTGGAGACAACCTAAGAACCTAGGTTCAAGACAGGTGAATGATTTGAAC 453 |||||||||||| |||| || |||||||||||||||||||||||||||| Sbjct 489 TTGGAGACAACCGAAGATCCGAGGTTCAAGACAGGTGAATGATTTGAAC 537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21564864321 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5