BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907173
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62690.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 340 5e-93
> AT1G62690.1 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:23210441-23211389 REVERSE LENGTH=680
Length=680
Score = 340 bits (184), Expect = 5e-93
Identities = 382/469 (81%), Gaps = 47/469 (10%)
Strand=Plus/Plus
Query 1 ATGCGGTACAAGAGAAGATTTGTGACAGTTTACAGGGATTTTCCAGAAGGTTGTGGTGTT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 100 ATGCGGTACAAGAGAAGATTTGTGACAGTTTACAGAGATTTTCCAGAAGGTTGTGGTGTT 159
Query 61 CCTTCAAAACATTTATCCAATGCTGATGA--GCTTTTGATGCAATCTAAGTT---TAAGG 115
|||||||||| | |||||||||||||||| | |||| |||||||||||||| |||||
Sbjct 160 CCTTCAAAACCTATATCCAATGCTGATGAAAG-TTTT-ATGCAATCTAAGTTCAATAAGG 217
Query 116 ATGGAATTGTCCTGCAGTCTCATGGAGACTTC-CTAGACATAACAAAGGAATCATCAAAT 174
||||||||||| ||||| |||||| ||||||| | | | ||||||||||| ||||| |||
Sbjct 218 ATGGAATTGTCTTGCAGGCTCATGAAGACTTCTCAA-AGATAACAAAGGAGTCATCGAAT 276
Query 175 GATTCGGAGACCGAGACTTCTATAACTGAGGAATCGATTCTTGAATCTAATGGAA-GTGT 233
||||||||||||||| ||||| |||||| || | || ||| || || ||| | ||
Sbjct 277 CATTCGGAGACCGAGAATTCTAGAACTGAAGA-T---TTGTTGGATG-AA-GGATCG-GT 329
Query 234 TCAAGAT-C-A-TC-AAGAGG-AG-GAAGGT-ATAGGAGAA-AGGGATGAAGAAGAGATG 285
|| ||| | | | ||| | | || || | || || | || || |||| ||||||
Sbjct 330 TCTTGATTCTAATGGAAGTGTTACTGATTGTCA-AG-AGGACAGAGA--AAGA-GAGATG 384
Query 286 AGCTCGGTAAAGAAGAGATGTTTGAGTTCACATAACTCAACCA-TGGAAGTTGAGACAGA 344
|||||||| |||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 385 AGCTCGGTGAAGAAGAGATGTTTGAGTTCACATAACTTAACAAGTG-AAGTTGAGACAGA 443
Query 345 TGTTGTGGATGTCTCAAAGAGAGTTATTGTTTCGGGACTCCCAGCTAAGTCGAAATGCCC 404
| | | || | | | | || |||| |||||| |||||||| ||||||||||
Sbjct 444 -GA-G-G-AT-----A--G-G--T-ATAGTTTTGGGACTTGCAGCTAAGGCGAAATGCCC 488
Query 405 TTGGAGACAACCTAAGAACCTAGGTTCAAGACAGGTGAATGATTTGAAC 453
|||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 489 TTGGAGACAACCGAAGATCCGAGGTTCAAGACAGGTGAATGATTTGAAC 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21564864321
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5