BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907188

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52640.1 | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90...   551    2e-156


> AT5G52640.1 | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, 
AtHsp90-1, HSP90.1 | heat shock protein 90.1 | chr5:21352399-21355361 
FORWARD LENGTH=2475
Length=2475

 Score =  551 bits (298),  Expect = 2e-156
 Identities = 361/391 (92%), Gaps = 5/391 (1%)
 Strand=Plus/Plus

Query  1     ATGAGACCGAAGAAGAGaaaaaaaaaGAGGGAAGAGAAGGAAGAA-TCTTTCGAGAATCT  59
             ||||||||||||||||| || ||||||||||||||||| |||||| || |||||||||||
Sbjct  1732  ATGAGACCGAAGAAGAG-AAGAAAAAGAGGGAAGAGAA-GAAGAAGTCCTTCGAGAATCT  1789

Query  60    CTGCAAGACGATTAAGGAAATTCTTGGAGACAAAGTTGAGAAGGTTGTGGTCTCAGACAG  119
              ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct  1790  GTGCAAGACGATTAAGGAAATTCTCGGGGACAAGGTTGAGAAGGTTGTGGTCTCAGACAG  1849

Query  120   GATTGTGGACTCTCCTTGCTGTCTAGTAACTGGTGAATACGGATGGACTGCGAACATGGA  179
             ||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct  1850  GATTGTGGACTCTCCCTGCTGTCTAGTAACTGGTGAATATGGATGGACTGCAAATATGGA  1909

Query  180   GAGGATTATGAAGACAGAGGCGTTGAGAGATAGCAGCATGAGTGGTTACATGTTGAGCAA  239
             ||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1910  GAGGATTATGAAGGCACAGGCGTTGAGAGATAGCAGCATGAGTGGTTACATGTCGAGCAA  1969

Query  240   GAAAACAATGGAGATCAACCCCGACAATGGTATCATGGAGGAGCTTAGGAAGAGAGCTGA  299
             ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct  1970  GAAAACAATGGAGATCAACCCCGACAACGGTATAATGGAGGAGCTCAGGAAGAGAGCTGA  2029

Query  300   AGTTGACAAGAATGGCAAGTCCGTTAAAGATCTCGTCATGAAGCTGT-TCGTGACAGCTT  358
             ||  |||||||||| |||||| ||||||||||| ||||||  ||||| | | ||||||||
Sbjct  2030  AGCAGACAAGAATGACAAGTCTGTTAAAGATCTTGTCATGTTGCTGTAT-GAGACAGCTT  2088

Query  359   TGTTGACTTCTGGATTCAGTCTTGATGAACC  389
             ||||||| |||||||||||||||||||||||
Sbjct  2089  TGTTGACGTCTGGATTCAGTCTTGATGAACC  2119



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5