BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907221
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 520 5e-147
> AT1G62210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 20 Blast hits to 18
proteins in 7 species: Archae - 0; Bacteria - 4; Metazoa -
7; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink). | chr1:22986002-22986861 FORWARD LENGTH=860
Length=860
Score = 520 bits (281), Expect = 5e-147
Identities = 352/386 (91%), Gaps = 6/386 (2%)
Strand=Plus/Plus
Query 20 CCACTAATGGCACCAAAGCTCCTCTTAGTGGTGGCATCGGAGGAGTTTCTCCGTCTCCTG 79
|||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 246 CCACAAATGGCACCAAAGCTCCTCTTAGTGGTGGCATTAGAGGAGTTGCTCCGTCTCATG 305
Query 80 TAACAAAAGGCGGAGCCACTAATGGCACCAAAACTCCTCTTATTGGTGTCATTGTAGGAG 139
||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 306 TAACAGAAGGCGGATCCACTAATGGCACTAAAACTCCTGTTATTGGTGTCATTGTAGGAG 365
Query 140 TTTCTCCCATCCCAGAAAGTGGAGCCACTATTGGCACCAAAGCTCCTCTTACTGGTGGCG 199
||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 366 TTTCTCCCATCAAAGAAAGTGGAGCCACTATTGGCACCAAAGCTCCTCTTAATGG---CG 422
Query 200 TTTTAAGAGCAGTTCCTCTACGTGAAGGCGGAGCAAATCTTGCCACTAACAACACTGGAA 259
|||||||| ||| ||||||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 423 TTTTAAGACCAGCTCCTCTACGTGAAGGTGAAGCAACTCTTGCCACTAACAACACTGGAA 482
Query 260 CTCCTAGTGTTTCCGTTATGGGAGTCGGTACTACCGTACAAAGCGAAGTTCTTTATACTA 319
||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 483 AACCTAGTGTTTCCGTTATGGGAGTCGGTACCAACGTACAAAGCGAAGTTCTTTTTACTA 542
Query 320 CTAAACAGTTTGAAACGAGATTTGTCATTAATGCGAAGGTGAGTGAAGATGGTAGCAATG 379
||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 543 CTAAAAACTTTGAAACGAGATTTGTCATCAATGCAAAGGTGAGTGAAGATGGTAGCAACG 602
Query 380 GTGGGAGGAAAGGTGCAAAGCCTTGA 405
||||||| |||||||||||||||
Sbjct 603 GTGGGAGT---GGTGCAAAGCCTTGA 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19152012369
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5