BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907223
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybr... 1105 0.0
> AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybrid
localisation domain | chr1:22980976-22982007 FORWARD LENGTH=1032
Length=1032
Score = 1105 bits (598), Expect = 0.0
Identities = 764/845 (90%), Gaps = 7/845 (1%)
Strand=Plus/Plus
Query 5 ACCCTCTAAGACCTATCACCAACATCCCAAGAAGCCACGGTCCGTCAAGTGTACGTATCA 64
||||||||||||| ||||||||||||||||||||| | ||||| | |||||||| |||
Sbjct 26 ACCCTCTAAGACCCATCACCAACATCCCAAGAAGCTATGGTCCAACGCGTGTACGTGTCA 85
Query 65 CATGCTCTGTTACTACCACCAATCCTCATCCTAATCATGAGAAGGCGCTTGTCCTTGAGC 124
|||||||||||||||||||||||||||| | |||||||||||| | ||||| |||||
Sbjct 86 CATGCTCTGTTACTACCACCAATCCTCAGCTTAATCATGAGAA--C-CTTGTAGTTGAGA 142
Query 125 AACGCCTTGTGAATCATCCT-TTGTCCAAGGACAACGACCCAACTCTGCAATCGACATGG 183
||||||||||||||| |||| || |||||| |||||||||| ||||||||||||||||||
Sbjct 143 AACGCCTTGTGAATCCTCCTCTT-TCCAAGAACAACGACCCGACTCTGCAATCGACATGG 201
Query 184 ACTCATCGGTTATGGGTTGCAGCGGGAAGCACAACTGTCTTTGCCTCTTTCGCTAAATCT 243
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct 202 ACTCATCGGTTATGGGTTGCAGCGGGAAGTACAACCATATTTGCCTCTTTCGCTAAATCT 261
Query 244 TTCATTGGAGGGTTTGGTTCCCATCTCTGGCTCGAACCAGCTTTAGCCAGTTATGCAGGG 303
||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||||||
Sbjct 262 ATCATTGGAGGGTTTGGTTCTCATCTTTGGCTCCAACCAGCTTTAGCGTGTTATGCAGGG 321
Query 304 TACGTCTTAGCTGATCTAGGCTCAGGTGTGTACCACTGGGCCATTGACAACTACGGTGAT 363
||||| || |||||||||||||| ||||| ||||||||||||||||| ||||| |||| |
Sbjct 322 TACGTGTTTGCTGATCTAGGCTCCGGTGTTTACCACTGGGCCATTGATAACTATGGTGGT 381
Query 364 AAATCAACACCTTTAGTAGGAGCACAACTCGAAGCGTCTCAGGGTCATCACAAGTGGCCT 423
|||||||||| |||| ||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 382 GCATCAACACCTATAGTTGGAGCCCAACTTGAAGCGTCTCAGGGTCATCACAAGTATCCC 441
Query 424 TGGACAATCACCAAGCGTCAATTCGCCAACAACTCACACACTATAGCTCGAGCCATAACT 483
||||||||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 442 TGGACAATCACAAAACGTCAATTCGCCAACAATTCATACACTATCGCTCGAGCCATAACT 501
Query 484 TTTACAGTTCTACCACTAAACCTTGTAATTAACAATCCTCTGTTTCATAGCTTTGTGAGT 543
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 502 TTTATAGTTCTACCACTAAACCTTGCAATTAACAATCCTCTGTTTCATAGCTTTGTGAGC 561
Query 544 ATATTTGCATTTTGCATATTGTTAAGCCAACAATTCCATGCTTGGGCTCATGGAACCACG 603
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 562 ACATTTGCATTTTGCATTTTGTTAAGCCAACAATTCCATGCTTGGGCTCATGGAACCAAG 621
Query 604 AGCAAGCTTCCGCCTCTCGTGGTGGCGTTACAGGATATGGGACTACTCGTTTCACGGAAA 663
||||||||||| ||||||||| ||||||| ||||| |||||||| || || |||||||||
Sbjct 622 AGCAAGCTTCCACCTCTCGTGATGGCGTTGCAGGACATGGGACTGCTTGTCTCACGGAAA 681
Query 664 CATCACTTGGGACATCACCAAGCACCATATAACAGCAACTACTGTGTAGTGAGTGGGGCA 723
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 682 GATCACCCGGGACATCACCAAGCACCGTATAACAGCAACTACTGTGTAGTGAGTGGGGCA 741
Query 724 TGGAACAAGGTTTTGGATGAAAGTAAGTTCTTTGAAG-CATTGGAGATGGCGTTGTATTT 782
|||||||| |||||||| |||||||| || ||| ||| |||||||||||||||||| |||
Sbjct 742 TGGAACAAAGTTTTGGACGAAAGTAACTTATTT-AAGGCATTGGAGATGGCGTTGTTTTT 800
Query 783 CCAGTTTGGTGTGAGACCAAGGTCATGGAACGAGCCAAACTCTGACTGGGCAGAAGAAAC 842
|||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 801 CCAGTTCGGTGTGAGACCAAACTCGTGGAACGAGCCAAACTCTGACTGGACAGAAGAAAC 860
Query 843 CGAGA 847
|||||
Sbjct 861 CGAGA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5