BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907234
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13680.1 | Symbols: | F-box and associated interaction doma... 135 7e-31
AT3G19880.1 | Symbols: | F-box and associated interaction doma... 95.3 1e-18
AT3G17490.1 | Symbols: | F-box and associated interaction doma... 80.5 3e-14
AT5G41510.1 | Symbols: | F-box and associated interaction doma... 58.4 2e-07
> AT3G13680.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4477289-4478721 REVERSE LENGTH=1433
Length=1433
Score = 135 bits (73), Expect = 7e-31
Identities = 776/1098 (71%), Gaps = 117/1098 (11%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTCCGATCTTTCGAAGG-G-TTTGGTAGAGGAGATACTCTCTAGGGTTC 58
||||||| ||| ||||| ||| ||| | |||||||||||||||||||||||||||||
Sbjct 1 ATGACGACCATGGGCGATC-TTC-CAGGCGATTTGGTAGAGGAGATACTCTCTAGGGTTC 58
Query 59 CAATAACTTCTCTGAGAGCTGTGA-GATCTACTTGCAAACAA-TGGAACTGTTTAACCAA 116
| | || |||||||| ||| | | ||||||||||| || || ||||||| |||| | ||
Sbjct 59 CGCTGACATCTCTGAGGGCTAT-ACGATCTACTTGCCAA-AAGTGGAACTCTTTATCGAA 116
Query 117 A-GATCCTAGCT-T--TACAAAGAAGCAAT-GTGATAA-AGCAACCAAGGGTTTGTTGGT 170
| | || | | | || ||| | |||| | | | || || ||| ||| | ||
Sbjct 117 AAG-TCAGATTTGTGGTAGAAA-A-GCAACAGC-AGCAGAG-AAT-AAG--TTTCTGGG- 167
Query 171 GATCATGCTTAATGATTCTAAGG-TCTGTTTGATGAG-TGTTAATCTCCATGGAATCCA- 227
| | ||| | || ||||| |||| | |||| |||| | || ||||||| |||||| |
Sbjct 168 GTTTATGATGAAGGATTC-AAGGGTTTGTTCAATGAAAT-TTGATCTCCAAGGAATC-AG 224
Query 228 AAACCACAAAGACG--T-GGTTGATCCATCTATAAAGC--GTATATGTGAACTTAATCAA 282
|||| || | | | | |||||| ||||||||||||| ||| | || |||| |||||
Sbjct 225 AAACGACGACGGGGAGTTGGTTGAGCCATCTATAAAGCAAGTA-A-GTAAACTCGATCAA 282
Query 283 GTCAAGGTATCT-AACGTCAT-CTATTGTGATGGCTTATTGTTATGCCA-CACCAAGGAC 339
|| |||| ||| || || | | | ||||| || ||| | ||||| | || ||||||
Sbjct 283 ATCGAGGTCTCTCAA-GTTTTTC-ACTGTGACGGTTTAGTCCTATGC-ATCATTAAGGAC 339
Query 340 GAAGACACTACTAGGCTCGTGGTTTGGGACCCGTATATGGGTCAAACCAGTTGGATCAAA 399
|| ||| | ||||| |||| ||| |||| ||| |||| ||||| || |||||| |
Sbjct 340 -AA--CAC-AG--GGCTCTTGGTATGGAACCCTTATTTGGGGCAAACTAGGTGGATCCAT 393
Query 400 CCTAGAATCCCTTACCACAGATCAGATATGT-TCGGTATCGGATACGACAAGAACAACAA 458
|| |||| | |||||| | | ||||| || | | | | ||||| || || ||| ||
Sbjct 394 CCGAGAAACAATTACCAGATAGAAGATAGGTAT-GCTCTTGGATATGATAACAACCGTAA 452
Query 459 CTACAAAATTTTGAGGGTTTTC--TTTG-AGTTT--GTCAACAAT-G--TA---GGGTAT 507
| ||||||| |||||| ||||| |||| | | | || ||| | | |||||
Sbjct 453 CCACAAAATATTGAGGATTTTCGATTTGTA-TCCAAG-CAGCAACCGCGTTTTTGGGTAC 510
Query 508 GAAATCTACGATTTTAAG-TCTAACTCATGGAGGGTTCTT-AC--CAT-C-TC-GTCTAA 560
||| |||||||||||| | ||||| ||||||| ||||||| | ||| | | || |
Sbjct 511 GAAGTCTACGATTTTA-GCTCTAATTCATGGAAGGTTCTTGATGTCATTCCTGAGTGGGA 569
Query 561 TATAGTGTTTTACAAACGAGGCGTGTCATTGAAAGGAAACACTTACTTTTT-TGCTCAA- 618
|||| || | | || |||| ||| |||||||| || |||| |||| ||| |||
Sbjct 570 TATACAGTCTCATTTTCGTGGCGCGTCTTTGAAAGGGAATGCTTA-TTTTCCTGCGCAAA 628
Query 619 -GAAAGAATCAA----AGT--TGAAGA-AGTAGATAAAGAATG-TGTTTTACTCTGTTTC 669
||||||| || || | |||| | || ||| ||| | |||| |||| ||||||
Sbjct 629 AGAAAGAAACAGTGGGAGGAATAAAGACAATAAATATTGAA-GATGTTCTACTTTGTTTC 687
Query 670 GATTTTACAAGAGAGAGATTTGGACCGGCTCTGC-ATCTTCCGTTTCACTGTGATGTTAG 728
||||||||||| ||||||||||||||| |||||| | || |||||||||| | | | |
Sbjct 688 GATTTTACAAGGGAGAGATTTGGACCGCCTCTGCCA-CTGCCGTTTCACTCTTACAAT-G 745
Query 729 ATATGA-TGATATG-GT-TCT-GTCTTCAGTTAGAGAAGAGCATCTTGCAGTGTTATTTC 784
| || | | || || ||| | ||| ||||| |||||||| || || ||||||| ||
Sbjct 746 C-A-GACTTTTTTGTGTCTCTAG-CTTGTGTTAGGGAAGAGCAGCTCGCTGTGTTATATC 802
Query 785 AGCGTTTAGATACAGATAAGA---TGGAGATATG-GATTACAACTAAGATTGAGCCCAAT 840
| || | | || | ||| | ||||| || | |||||| ||||||||| ||||||
Sbjct 803 AACGCTGGGGGGCATTTGAGACAATCGAGATTTGTG-TTACAAATAAGATTGATCCCAAT 861
Query 841 GCGGTGTCATGGAACAAGTTCTTAGCCGTGAATACGAAGACAATCACTGGTTTTGAGTTT 900
|||| || |||| |||||| || ||| || | | | |||||||||| | ||
Sbjct 862 ACGGTTTCGTGGAGCAAGTT-TT-----TGA-TA--ACGTC---CACTGGTTTTCCGGTT 909
Query 901 GAGG-TTGAACCTAGGAGTTTCTTTG-TTGATGAGGAGAAGAAAGTGGCAGTGATTTGTG 958
|| || | | |||| || ||| ||||||||||||||||||| || ||| ||| ||
Sbjct 910 GACACTTTTTC-TGGGAGCTT-TTTCATTGATGAGGAGAAGAAAGTTGCTGTGGTTTTTG 967
Query 959 ATATACACAGAT-TCAAACCGACCAAGACCGGCCTCTACAAAACAGCTTGCATCATTGGG 1017
|| || | |||| | |||||||| ||||| | | |||| ||| || || || |||||
Sbjct 968 ATTTAGATAGATAT-AAACCGACTGAGACCTGTCGCTACCAAATAGTTTATATTATTGGA 1026
Query 1018 GAGGATGGATACTTGAAA 1035
| |||| |||||| |||
Sbjct 1027 CAAGATGAATACTTCAAA 1044
> AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6911435-6912604 REVERSE LENGTH=1170
Length=1170
Score = 95.3 bits (51), Expect = 1e-18
Identities = 298/411 (73%), Gaps = 42/411 (10%)
Strand=Plus/Plus
Query 658 TTACTCTGTTTCGATTTTACAAG-AGAGAGATTTGGAC-CGGCTCTGCATCTTCCGTTTC 715
||| ||||||| |||||||| | |||||||||||| | | ||| ||||| |||||||
Sbjct 649 TTAATCTGTTTTGATTTTAC-GGCAGAGAGATTTGG-CAAGTTTCTTCATCTACCGTTTC 706
Query 716 ACTGTGATGTTAGATAT--GATGATA--TG-GTTCTGTCTTCAGTTAGAGAAGAGCATCT 770
| | |||| || ||| | || |||| | | ||| |||| |||| ||||||| | ||
Sbjct 707 AGTTTGATATT-GATTTCGGA-GATACCGGAGGTCTATCTTGTGTTAAAGAAGAGAAACT 764
Query 771 TGCAGTGTTATTTCAGCGTTTA-GATAC-AGATAAGATGGAGATATGGATTACAACTAAG 828
|| |||||| || | || || ||| | | || ||| ||||| ||| |||| ||||||
Sbjct 765 CGCGGTGTTACTTAAACG-CTATGAT-CAAAATGTGATAGAGATTTGGGTTACTACTAAG 822
Query 829 ATTGAGCCCAATGCGGTGTCATGG-AACAAGTTCTTAGCCG-TGAATA-CGAAGACAATC 885
||||||||||||| ||||| ||| ||| |||||| | || ||| | ||||| |
Sbjct 823 ATTGAGCCCAATGTGGTGTTTTGGAAAC-CCTTCTTAAAAGTTG-ATATTG-AGACAGT- 878
Query 886 ACT-GGTTTTGAGT-TTGAGGTTGAACCTAG-GAGTTTCTTTGTTGATGAGGAGAAGAAA 942
||| ||| | | |||| || | || | |||||||| |||| || |||||||||
Sbjct 879 ACTCGGTGCT-CTTCTTGA-TTTTCAGCTTGACAGTTTCTTCATTGACGAAGAGAAGAAA 936
Query 943 GTGGCAGTGATTTGTGATATACACAGATTCAAACCGACCAAGACCGGCCTCTACAAAACA 1002
| || ||| || | | | || ||||||| | ||| | | ||||||||||
Sbjct 937 CTCGCGGTG-GTT-T--T-T----AG-TTCAAACAAATCAA-A-ATG---CTACAAAACA 981
Query 1003 GCTTGCATCATTGGGGAGGATGGATACTTGAAAGAAGTGGATCTTGGAGAA 1053
|||| ||| ||||| || ||| |||||||||||||||||||||||||||||
Sbjct 982 GCTTACATTATTGGAGAAGATAGATACTTGAAAGAAGTGGATCTTGGAGAA 1032
> AT3G17490.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5984827-5985993 FORWARD LENGTH=1167
Length=1167
Score = 80.5 bits (43), Expect = 3e-14
Identities = 120/155 (77%), Gaps = 14/155 (9%)
Strand=Plus/Plus
Query 6 GATGATGTCC-GATCTTTCGA-AGGGTTTGGTAGAGGAGATACTCTCTAGGGTTCCAA-T 62
||||||| || ||||||| | ||| |||||||||||||||||||||||||||||| |
Sbjct 3 GATGATG-CCTCATCTTTC-AGAGGATTTGGTAGAGGAGATACTCTCTAGGGTTCCGGCT 60
Query 63 A-ACTTCTCTGAGA-GCTGTGA-GATCTACTTGCAAACAATGGAACTG-TTTAACCAAAG 118
| | | |||| | | | | | | ||| |||||||||||||||||| || ||| || |
Sbjct 61 ATA-T-CTCTAAAACGAT-T-ACGATATACTTGCAAACAATGGAA-TGCTTTGTTTAATG 115
Query 119 ATCCTAGCTTTACAAAGAAGCAATGTGATAAAGCA 153
||| || || | |||||||| |||||||||||
Sbjct 116 ATCAAAGATTCAGTAAGAAGCACCGTGATAAAGCA 150
> AT5G41510.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16607124-16608326 FORWARD LENGTH=1203
Length=1203
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 665 GTTTCGATTTTACAAGAGAGAGATTTGGACC 695
|||||||||||||||||||||||||||||||
Sbjct 695 GTTTCGATTTTACAAGAGAGAGATTTGGACC 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5