BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907248
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61950.1 | Symbols: CPK19 | calcium-dependent protein kinase... 2662 0.0
> AT1G61950.1 | Symbols: CPK19 | calcium-dependent protein kinase
19 | chr1:22899417-22901946 FORWARD LENGTH=1661
Length=1661
Score = 2662 bits (1441), Expect = 0.0
Identities = 1589/1661 (96%), Gaps = 8/1661 (0%)
Strand=Plus/Plus
Query 1 ATGGGATGTCTCTGCATCAATCTGAAGAAGAAGCTCAAGAAACCAACACCAGACAACAAT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 1 ATGGGATGTCTCTGCATCAATCTGAAGAAGAAGGTCAAGAAACCAACACCAGACATCAGT 60
Query 61 GGAGAACAAAACACAAAGGTACGGAGCAGAGAAATAACACCAAAACAACAACCTCGTCAA 120
||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 61 GGAGAACAAAACACAGAGGTAAAGAGCAGAGAAATAACACCAAAAGAACAACCTCGTCAA 120
Query 121 AGACAATCAGCTCCAAGAGCCAATTTCCAGATTGTGGTGCAACCTCATAAACTTCCACTT 180
|||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 121 AGACAACCAGCTCCAAGAGCCAAGTTCCAGATTGTGGTGCAACCTCATAAACTCCCACTT 180
Query 181 CCAATT-ATACAGCATCAAGAAAAACAAAAGCTAATCAATCATCAAAAACAGAGCAGCCT 239
||| || | |||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 181 CCACTTCCT-CAGCCTCAAGAAAAACAAAAGCTGATCAATCATCAAAAACAGAGCACCCT 239
Query 240 GCAACAACCAGAACCGATCTTAGGGAAACCATTTGAAGACATTAAGGAGAAGTACAGTCT 299
|||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 240 GCAACAACCAGAACCGATCTTAGGGAGACCATTTGAAGATATTAAGGAGAAGTATAGTCT 299
Query 300 CGGTCGCGAATTAGGTCGTGGCCAATTCGGTATAACGTATATATGTACAGAGATCTCATC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 TGGTCGCGAATTAGGTCGTGGCCAATTCGGTATAACGTATATATGTACAGAGATTTCATC 359
Query 360 AGGCAAGAACTTTGCTTGTAAATCCATCTTGAAGAGAAAACTCATCAGAACTCAGGACAG 419
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 360 AGGCAAGAACTTTGCTTGTAAATCCATCTTGAAGAGAAAGCTCATCAGAACTAAGGACAG 419
Query 420 AGAGGATGTAAGAAGGGAGATACAGATAATGCACTACTTATCAGGACAACCGAACATTGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 AGAGGATGTAAGAAGGGAGATACAGATAATGCACTACTTATCAGGACAACCAAACATTGT 479
Query 480 GGAGATCAAAGGAGCTTATGAAGACAGACAAAGTGTTCATCTTGTAATGGAGCTTTGCGA 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAAATCAAAGGAGCTTATGAAGACAGACAAAGTGTTCATCTTGTAATGGAGCTTTGCGA 539
Query 540 AGGCGGCGAGCTTTTTGATAAGATCACTAAACGAGGACATTACTCAGAGAAAGCAGCCGC 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGCGGTGAGCTTTTTGATAAGATCACTAAACGAGGACATTACTCAGAGAAAGCAGCCGC 599
Query 600 AGAGATCATTAGAAGTGTGGTTAAAGTTGTACAGATTTGTCATTTCATGGGTGTGATTCA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGAGATCATTAGAAGTGTGGTTAAAGTTGTACAGATTTGTCATTTCATGGGTGTGATTCA 659
Query 660 TCGCGACCTTAAACCCGAAAACTTCTTGTTGTCCAGTAAAGATGAAGCTTCCTCAATGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCGCGACCTTAAACCCGAAAACTTCTTGTTGTCCAGTAAAGATGAAGCTTCCTCAATGCT 719
Query 720 CAAGGCTACTGATTTTGGTGTTTCAGTTTTCATCGAAGAAGGGAGAGTGTATGAAGACAT 779
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 CAAGGCTACTGATTTTGGTGTTTCAGTTTTCATCGAAGAAGGGAAAGTGTATGAAGACAT 779
Query 780 TGTTGGAAGTGCATATTACGTTGCACCAGAGGTTCTGAAGAGAAACTACGGCAAAGCAAT 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 TGTTGGAAGTGCATATTACGTTGCACCGGAGGTTCTGAAGAGAAACTACGGCAAAGCAAT 839
Query 840 CGATATTTGGAGCGCTGGAGTCATTCTCTACATCCTTCTCTGCGGCACTCCTCCGTTTTG 899
||||||||||||||| ||||| ||||||||||||||||||||||| | |||||| |||||
Sbjct 840 CGATATTTGGAGCGCCGGAGTTATTCTCTACATCCTTCTCTGCGGAAATCCTCCATTTTG 899
Query 900 GGCCGAGACTGATAAGGGAATATTTGAGGAGGTTTTGAGAGGAGAGATTGATTTTGAGTC 959
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 GGCAGAGACTGATAAGGGAATATTTGAGGAGATTTTGAGAGGAGAGATTGATTTTGAGTC 959
Query 960 AGAACCATGGCCGTCGATTTCAGAGAGTGCTAAGGATTTGGTGAGGAACATGTTAAAGTA 1019
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 960 GGAACCATGGCCGTCGATTTCGGAGAGTGCTAAGGATTTGGTGAGAAACATGTTAAAGTA 1019
Query 1020 TGATCCCAAGAAACGGTTTACTGCGGCTCAAGTCCTAGGTAAAGAACATCCGTGGATACG 1079
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1020 TGATCCCAAGAAACGGTTTACTGCGGCTCAAGTCCTAG--AA----CATCCTTGGATACG 1073
Query 1080 AGAAGGTGGCGAAGCTTCTGATAAGCCAATCGATAGCGCGGTTTTGTCGCGGATGAAGCA 1139
||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1074 AGAAGGTGGAGAAGCTTCTGATAAACCAATCGATAGTGCTGTTTTGTCGCGGATGAAGCA 1133
Query 1140 ACTCCGAGCTATGAATAAGCTTAAGAAGCTTGCATTGAAGTTTATCGCGCAAAATCTCAA 1199
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1134 ACTCCGAGCTATGAATAAGCTTAAGAAGCTTGCATTTAAATTTATCGCGCAAAATCTCAA 1193
Query 1200 AGAAGAGGAACTAAAGGGTCTCAAGACAATGTTCGCAAACATGGATACTGATAAGAGCGG 1259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1194 AGAAGAGGAACTAAAGGGTCTCAAGACAATGTTCGCAAACATGGATACCGATAAGAGCGG 1253
Query 1260 TACAATCACCTACGAGGAATTGAAAACCGGACTGGAAAAACTCGGTTCGAGGTTAACCGA 1319
||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1254 TACAATCACTTACGACGAATTGAAATCCGGACTGGAAAAACTCGGTTCGAGGTTAACCGA 1313
Query 1320 AACCGAAGTTAAGCAGCTCTTGGAAGATGCTGATGTCGATGGGAACGGTACGATTGATTA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1314 AACCGAAGTTAAGCAGCTCTTGGAAGATGCTGATGTCGATGGGAACGGTACTATTGATTA 1373
Query 1380 CATTGAGTTCATTTCAGCTACTATGAACCGGTTCAGAGTAGAAAGAGAGGAGAATTTGTT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1374 CATTGAGTTCATTTCAGCTACTATGAACCGGTTCAGAGTAGAAAGAGAGGATAATTTGTT 1433
Query 1440 CAAAGCATTTCAACATTTCGATAAAGATAATAGCGGGTTTATTTCGAGACAAGAATTAGA 1499
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1434 CAAAGCTTTTCAACATTTCGATAAAGATAACAGCGGGTTTATTTCGAGACAAGAATTAGA 1493
Query 1500 AACAGCAATGAAAGAGTATAATATGGGAGATGATACCATGATCAAAGAGATTATCTCAGA 1559
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1494 AACAGCTATGAAAGAGTATAATATGGGAGATGATATTATGATCAAAGAGATTATCTCAGA 1553
Query 1560 AGTTGATGCTGATAACGATGGAAGTATTAATTATCAAGAGTTTTGCAATATGATGAGGAG 1619
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1554 AGTTGATGCTGATAATGATGGAAGTATAAATTATCAAGAGTTTTGCAATATGATGAAGAG 1613
Query 1620 CTGCTCAAAATCACATCAAACAAAATTGGTTCCACCCAATT 1660
||||||| ||||||| ||| |||||||||||| ||| ||||
Sbjct 1614 CTGCTCACAATCACACCAATCAAAATTGGTTCAACCGAATT 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82128091620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5