BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907276
Length=216
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61700.1 | Symbols: | RNA polymerases N / 8 kDa subunit | c... 350 4e-96
> AT1G61700.1 | Symbols: | RNA polymerases N / 8 kDa subunit |
chr1:22787012-22788333 FORWARD LENGTH=530
Length=530
Score = 350 bits (189), Expect = 4e-96
Identities = 207/216 (96%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 1 ATGATCGTACCAGTCCGTTGTTTTACTTGTGGAAAGGTGATTGGGAACAAATGGGATACA 60
|||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 94 ATGATCGTCCCTGTTCGTTGTTTTACTTGTGGAAAGGTGATTGGGAACAAATGGGACACA 153
Query 61 TACCTTGAACTTCTCCAGGCTGATTACGCTGAAGGGGATGCTCTTGATGCGCTTGGGTTA 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 154 TACCTTGAACTTCTCCAGGCTGATTACGCTGAAGGGGATGCTCTTGACGCGCTTGGATTA 213
Query 121 GTCCGTTACTGCTGTAGACGTATGCTTATGACTCATGTCGATCTAATCGAAAAGCTTCTA 180
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GTCCGTTACTGCTGCAGGCGTATGCTTATGACTCATGTCGATCTAATCGAAAAGCTTCTA 273
Query 181 AACTACAACACTATGGAGAAATCTGACCCCAATTAA 216
||||||||||||||||||||||| ||||||||||||
Sbjct 274 AACTACAACACTATGGAGAAATCCGACCCCAATTAA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9651407808
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5