BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907281

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61688.1 | Symbols:  | Defensin-like (DEFL) family protein |...   300    6e-81


> AT1G61688.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:22780733-22781388 REVERSE LENGTH=413
Length=413

 Score =  300 bits (162),  Expect = 6e-81
 Identities = 262/310 (85%), Gaps = 8/310 (3%)
 Strand=Plus/Plus

Query  1    ATGGCTAACACCCCAAAAACTCTAATCGCAATTGTTTTGAGTGTCATTTTCATCATATCT  60
            |||||||||||||||||||| ||||||||| ||||||| || || ||| |||||||||||
Sbjct  36   ATGGCTAACACCCCAAAAACCCTAATCGCATTTGTTTTCAGCGTTATTGTCATCATATCT  95

Query  61   TATGTTCATTGTCATACAACAACTGCAAGTGCCCCAGGGAGCGAG-GGACCAATAACGGA  119
            |||||||||||||||||||||| ||||||||||||| | || | | | ||||| |||  |
Sbjct  96   TATGTTCATTGTCATACAACAATTGCAAGTGCCCCAAGCAGTG-GTGAACCAACAACATA  154

Query  120  CGCAAAAAGTCCTGAAATTAGGGAGTGGGAGCACAAGC-ACGATGGGACTTGCTTCGAT-  177
            ||||| | |||||| | ||  | ||     |||| | | ||||||||| |||||||| | 
Sbjct  155  CGCAACAGGTCCTGCACTTTCGAAGCACTCGCACGA-CAACGATGGGATTTGCTTCG-TA  212

Query  178  ACACCAGCGTGTTATGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTCATGAA  237
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  213  ACACCAGCGTGTTTTGCCCCAGGCCAATATGAAATAGGTTGCATTGTGTATTGTCACGAA  272

Query  238  GGCCATTATAATCATTACGCATGTTTTCATACAT-ACTGTTGTTGTTATAATAGAGATAA  296
              ||||||||| ||||||  |||| || ||| || | |||||||||||||||| ||||||
Sbjct  273  TCCCATTATAAACATTACAAATGTGTTAATAGATCA-TGTTGTTGTTATAATACAGATAA  331

Query  297  GAATGTGTCC  306
            ||||| ||||
Sbjct  332  GAATGCGTCC  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5