BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907284
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61667.1 | Symbols: | Protein of unknown function, DUF538 |... 793 0.0
> AT1G61667.1 | Symbols: | Protein of unknown function, DUF538
| chr1:22767663-22768501 FORWARD LENGTH=714
Length=714
Score = 793 bits (429), Expect = 0.0
Identities = 457/471 (97%), Gaps = 0/471 (0%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTCTTCTTCTTCTACTTCTTGTCCAATTCATTAGTCCATCTTCGCAATCT 60
|||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||
Sbjct 12 ATGTCTATGCTTCTTCTTCTTCTTCTTCTTGTCCCATTCATTACTCCATCTTCGCAATCT 71
Query 61 TCGATTCGAAACCTCCTCGAAGCTCGTGGTTTACCAGGTGGTTTGTTTCCAGACAACGTG 120
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 72 TCCATTCGAAACCTCCTCGAAGCTCGCGGTTTACCAGGTGGTTTGTTTCCAGACAACGTG 131
Query 121 GAGAGTTATAGTCTAGATGATAAGACAGGAGAGCTCGAAGTTCAGCTACAGAATCCTTGT 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 132 GAGAGTTATAGTCTAGATGATAAGACAGGAGAGCTCGAAGTTCAGCTACAAAATCCTTGT 191
Query 181 TTTGCTCGGTTCGAAAACAGAGTATATTTTGATCGTGTGATTAGAGCAAATCTAAGCTAT 240
|| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 192 TTCGCTCGGTTCGAAAACAGAGTATATTTTGATCGTGTGATTAAAGCAAATTTAAGCTAT 251
Query 241 GGTGGGCTTGTTGGACTTGAAGGTTTGACATAAGAAGAGCTTTTTCTTTGGTTACCTGTT 300
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 252 GGTGGGCTTGTTGGACTTGAAGGTTTAACACAAGAAGAGCTTTTTCTTTGGTTACCTGTT 311
Query 301 AAAGGCATTGCAGTGAATGATCCTTCTTCTGGACTTGTTCTTTTCGATATCGGTGTTGCT 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 312 AAAGGCATTGCAGTGAATGATCCTTCTTCTGGACTTGTTCTCTTCGATATCGGTGTTGCT 371
Query 361 CATAAACAAATCTCTCGTTCTCTCTTTGAAGATCCTCCTGTTTGTTATCCTCCTGGATCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CATAAACAAATCTCTCGTTCTCTCTTTGAAGATCCTCCTGTTTGTTATCCTCCTGGATCT 431
Query 421 ATAATGGAGAAGTTAGAGAAAAGCAAGATGGATATTCAGCTCAAGAGATGA 471
||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 432 ATAATGGAGAAGTTAGAAAAAAGCAAGATGGATATTCAGCTCAAGAGATGA 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5