BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907286 Length=2199 Score E Sequences producing significant alignments: (Bits) Value AT1G61650.1 | Symbols: | pseudogene, similar to chromomethylas... 420 3e-116 AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:30... 204 4e-51 > AT1G61650.1 | Symbols: | pseudogene, similar to chromomethylase-like protein, blastp match of 45% identity and 3.0e-24 P-value to GP|27529842|dbj|BAC53936.1||AB032538 chromomethylase-like protein {Nicotiana tabacum} | chr1:22750965-22751562 REVERSE LENGTH=598 Length=598 Score = 420 bits (227), Expect = 3e-116 Identities = 279/303 (92%), Gaps = 7/303 (2%) Strand=Plus/Plus Query 1064 ATGTGCATATTGTGTGTGGGGGTCCTCCATGCCAGGGACTTAGCGGTTTTA-ACCGATTT 1122 |||||||| |||| |||||||||| |||||||||||||||||| ||||||| |||||||| Sbjct 293 ATGTGCATCTTGTATGTGGGGGTCTTCCATGCCAGGGACTTAGTGGTTTTACACCGATTT 352 Query 1123 AGAAATAAAGATAAACCACTTCAAGATG-aaaaaaaCAATCAAGTGACGGTTTTCATGGA 1181 |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| | Sbjct 353 AGAAATAAAGATAAACCACTTCAAGATGAAAAAAAACAATGAAGTGACGG-TTTCATGAA 411 Query 1182 TATCATAGAC--TACTTGAAGCCCAAATACGTCTTGATGGAGAACGTTGTAAGTCTTTTA 1239 |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 412 TATCATAGACTATACTTGAAGCCCAAATACGTCTTGATGGAGAACGTTGTAAATCTTTTA 471 Query 1240 GGTTTCGCG-AAAGGATTTGTTGGTCGTTATGCAGTAGCTCGTCTTGTAAACAAGAATTA 1298 |||||| | |||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 472 GGTTTCATGGAAAG-ATTTGTTGGTCGTTATGTTGTAGCTCGTCTTGTAAACAAGAATTA 530 Query 1299 CCAAGCAAGATTAGGCATAATGGCTGCTGGTGCATACGGTGTTCCTCAGTGTAGATACAG 1358 ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||| Sbjct 531 CCAAGCAAGATGAGGCATAATGGCTGCTGGTGCATACAATGTTCCTCAATGTAGGTACAT 590 Query 1359 GGT 1361 ||| Sbjct 591 GGT 593 > AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:30342394-30347048 FORWARD LENGTH=2593 Length=2593 Score = 204 bits (110), Expect = 4e-51 Identities = 239/301 (79%), Gaps = 10/301 (3%) Strand=Plus/Plus Query 1778 TGGTACCTAATTATGCAATCACA-T-ATAGAGATGGAAAATCTAAAAAGCCATTTGGTCG 1835 |||| ||| ||||||||| || | ||| | | |||||||| |||||||| |||||| | Sbjct 2003 TGGTCCCTGCTTATGCAATTTCATTCATA-A-AAGGAAAATCAAAAAAGCCGTTTGGTAG 2060 Query 1836 --TTTGTGGTACGATGAGATTATTAACACGGTCGTGACAAGAGCACAACCTCACAACCAG 1893 |||| ||| ||||| || ||||||| || |||||||| || |||||||||||||| Sbjct 2061 ACTTTGGGGT--GATGAAATCGTTAACACTGTTGTGACAAGGGCTGAACCTCACAACCAG 2118 Query 1894 TGTGTACTTCACCCAAAGCAAAACCGAGTTCTT-TCAGCCCGCGAAAATGCAAGACTACA 1952 |||||| | || |||| ||||||||| | | || || | || || ||||| ||| |||| Sbjct 2119 TGTGTAATCCATCCAATGCAAAACCGTG-TGTTGTCTGTTCGTGAGAATGCGAGATTACA 2177 Query 1953 AGGATTTCCTGATTGCTATAGGCTTTACGGACCTGTTGATGAAAAGTACATCCAGGTTGG 2012 || || |||||||| || | ||| | ||| | || | |||||||||||||||||||| Sbjct 2178 GGGGTTCCCTGATTGTTACAAGCTCTGTGGAACAATTAAGGAAAAGTACATCCAGGTTGG 2237 Query 2013 GAATGCTGTTGCTGTTCCAGTCGGGGTTGCCTTAGGATATGCGTTTGGGATGGCGAGTCA 2072 ||||||||| || ||||| || |||||||| ||||||||||| ||||| ||||||||||| Sbjct 2238 GAATGCTGTGGCAGTTCCTGTAGGGGTTGCATTAGGATATGCCTTTGGTATGGCGAGTCA 2297 Query 2073 A 2073 | Sbjct 2298 A 2298 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109085784285 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5