BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907286
Length=2199
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61650.1 | Symbols: | pseudogene, similar to chromomethylas... 420 3e-116
AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:30... 204 4e-51
> AT1G61650.1 | Symbols: | pseudogene, similar to chromomethylase-like
protein, blastp match of 45% identity and 3.0e-24 P-value
to GP|27529842|dbj|BAC53936.1||AB032538 chromomethylase-like
protein {Nicotiana tabacum} | chr1:22750965-22751562
REVERSE LENGTH=598
Length=598
Score = 420 bits (227), Expect = 3e-116
Identities = 279/303 (92%), Gaps = 7/303 (2%)
Strand=Plus/Plus
Query 1064 ATGTGCATATTGTGTGTGGGGGTCCTCCATGCCAGGGACTTAGCGGTTTTA-ACCGATTT 1122
|||||||| |||| |||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 293 ATGTGCATCTTGTATGTGGGGGTCTTCCATGCCAGGGACTTAGTGGTTTTACACCGATTT 352
Query 1123 AGAAATAAAGATAAACCACTTCAAGATG-aaaaaaaCAATCAAGTGACGGTTTTCATGGA 1181
|||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |
Sbjct 353 AGAAATAAAGATAAACCACTTCAAGATGAAAAAAAACAATGAAGTGACGG-TTTCATGAA 411
Query 1182 TATCATAGAC--TACTTGAAGCCCAAATACGTCTTGATGGAGAACGTTGTAAGTCTTTTA 1239
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 412 TATCATAGACTATACTTGAAGCCCAAATACGTCTTGATGGAGAACGTTGTAAATCTTTTA 471
Query 1240 GGTTTCGCG-AAAGGATTTGTTGGTCGTTATGCAGTAGCTCGTCTTGTAAACAAGAATTA 1298
|||||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 472 GGTTTCATGGAAAG-ATTTGTTGGTCGTTATGTTGTAGCTCGTCTTGTAAACAAGAATTA 530
Query 1299 CCAAGCAAGATTAGGCATAATGGCTGCTGGTGCATACGGTGTTCCTCAGTGTAGATACAG 1358
||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 531 CCAAGCAAGATGAGGCATAATGGCTGCTGGTGCATACAATGTTCCTCAATGTAGGTACAT 590
Query 1359 GGT 1361
|||
Sbjct 591 GGT 593
> AT1G80740.1 | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:30342394-30347048
FORWARD LENGTH=2593
Length=2593
Score = 204 bits (110), Expect = 4e-51
Identities = 239/301 (79%), Gaps = 10/301 (3%)
Strand=Plus/Plus
Query 1778 TGGTACCTAATTATGCAATCACA-T-ATAGAGATGGAAAATCTAAAAAGCCATTTGGTCG 1835
|||| ||| ||||||||| || | ||| | | |||||||| |||||||| |||||| |
Sbjct 2003 TGGTCCCTGCTTATGCAATTTCATTCATA-A-AAGGAAAATCAAAAAAGCCGTTTGGTAG 2060
Query 1836 --TTTGTGGTACGATGAGATTATTAACACGGTCGTGACAAGAGCACAACCTCACAACCAG 1893
|||| ||| ||||| || ||||||| || |||||||| || ||||||||||||||
Sbjct 2061 ACTTTGGGGT--GATGAAATCGTTAACACTGTTGTGACAAGGGCTGAACCTCACAACCAG 2118
Query 1894 TGTGTACTTCACCCAAAGCAAAACCGAGTTCTT-TCAGCCCGCGAAAATGCAAGACTACA 1952
|||||| | || |||| ||||||||| | | || || | || || ||||| ||| ||||
Sbjct 2119 TGTGTAATCCATCCAATGCAAAACCGTG-TGTTGTCTGTTCGTGAGAATGCGAGATTACA 2177
Query 1953 AGGATTTCCTGATTGCTATAGGCTTTACGGACCTGTTGATGAAAAGTACATCCAGGTTGG 2012
|| || |||||||| || | ||| | ||| | || | ||||||||||||||||||||
Sbjct 2178 GGGGTTCCCTGATTGTTACAAGCTCTGTGGAACAATTAAGGAAAAGTACATCCAGGTTGG 2237
Query 2013 GAATGCTGTTGCTGTTCCAGTCGGGGTTGCCTTAGGATATGCGTTTGGGATGGCGAGTCA 2072
||||||||| || ||||| || |||||||| ||||||||||| ||||| |||||||||||
Sbjct 2238 GAATGCTGTGGCAGTTCCTGTAGGGGTTGCATTAGGATATGCCTTTGGTATGGCGAGTCA 2297
Query 2073 A 2073
|
Sbjct 2298 A 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109085784285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5