BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907291
Length=2538
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61610.1 | Symbols: | S-locus lectin protein kinase family ... 3670 0.0
> AT1G61610.1 | Symbols: | S-locus lectin protein kinase family
protein | chr1:22733472-22736509 FORWARD LENGTH=2529
Length=2529
Score = 3670 bits (1987), Expect = 0.0
Identities = 2369/2551 (93%), Gaps = 35/2551 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAATTTTACAGAAACCTTACTGTGGTGACGACCCTTTTGATTTTGCTTCAACTA 60
||||||| |||| |||||||||||||| |||||||||| |||||||| || | |||||||
Sbjct 1 ATGGCAGGATTTAACAGAAACCTTACTTTGGTGACGACTCTTTTGATATTCCATCAACTA 60
Query 61 TGTACCAACGTATCTTGCTCCACAAGCAACTCAATCACCAGAAACCACACGATACGAGAT 120
|||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||
Sbjct 61 TGTAGCAACGTATCTTGCTCCACAAGCAACTCATTCACTAGAAACCACACAATACGAGAG 120
Query 121 GGAGACTCACTTG-TTAGCGAGGATGAAAGCTTCGAGCTTGGATTCTTCAGCCCCAAAGA 179
|||||||||| || | |||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 121 GGAGACTCAC-TGATCAGCGAGGATGAAAGCTTCGAGCTTGGATTCTTCACCCCCAAAAA 179
Query 180 TTCTACTTTCAGGTATGTCGGAATATGGTACAAGAACATCGAACCTCGAACAGTTGTCTG 239
||| || || |||||||| |||||||||||||||||||| ||||||| ||||||||| ||
Sbjct 180 TTCGACGTTAAGGTATGTTGGAATATGGTACAAGAACATAGAACCTCAAACAGTTGTTTG 239
Query 240 GGTTGCGAATCGAGAGAAGCCATTGTTGGATCACAAGGGAGCTTTGAAGATTGCAGATGA 299
|||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||
Sbjct 240 GGTTGCGAATAGAGAGAAGCCGTTGTTGGATCACAAGGGAGCTCTAAAGATTGCAGATGA 299
Query 300 TGGGAATTTGGTGGTCGTGAATGGGCAAAACGACACCATTTGGTCCACAAATGCT-AAGC 358
|| ||||||||| ||||||| || |||||||| ||||||||||||||||||| | |||
Sbjct 300 CGGAAATTTGGTGATCGTGAACGGTCAAAACGAAACCATTTGGTCCACAAATG-TCGAGC 358
Query 359 CCGAGTCAAACAACACTGTTGCTGTTCTGTTGAAAACAGGGGATTTGGTTCTGTCTTCAG 418
|||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 359 CCGAGTCAAACAACACGGTTGCTGTTCTGTTCAAAACAGGGGATTTGGTTCTGTGTTCAG 418
Query 419 ACTCAGATAGAGGCAAATGGTATTGGGAGAGTTTTAACAATCCAACCGACACTTTCTTGC 478
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACTCAGACAGAAGAAAATGGTATTGGGAGAGTTTTAACAATCCAACCGACACTTTCTTGC 478
Query 479 CCGGTATGAGGGTTCGGGTGTATCCTTCGCATGGAGAAAATCGGGCTTTTACCCCGTGGA 538
|||||||||||||||||||| ||||||||| |||||||||||| || |||| ||||||||
Sbjct 479 CCGGTATGAGGGTTCGGGTGAATCCTTCGCTTGGAGAAAATCGCGCATTTATCCCGTGGA 538
Query 539 AATCCGAGAATGATCCTTCACCAGGAAAGTATTCAATGGGCATCGATCCTGTTGGAGCAC 598
||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 539 AATCCGAGAGTGATCCTTCACCAGGAAAGTATTCAATGGGGATTGATCCTGTGGGAGCAC 598
Query 599 TAGAGATTGTGATTTGGGAAGGGGAAAAGAGGAAATGGCGTAGCGGACCGTGGAATTCAG 658
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 599 TAGAGATTGTGATTTGGGAAGGGGAAAAGAGAAAATGGCGTAGCGGACCGTGGAATTCGG 658
Query 659 CTATCTTTACGGGTATACCGGATATGTTCCGTTTCACGAATTATATTTACGGGTTTAAGC 718
|||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 659 CTATCTTTACCGGTATACCTGATATGCTCCGTTTCACAAATTATATTTACGGGTTTAAGC 718
Query 719 TCTCT-C-C-TCCGGATAGAGATGGTAGCGTGTACTTCACGTATGTTGCCACAGATAGTT 775
||||| | | ||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 TCTCTTCTCCTCCTGATAGAGATGGTAGCGTGTACTTCACGTATGTTGCCTCAGATAGTT 778
Query 776 CCGATTTCTTGAGGTTTTGGATTAGGTTTGATGGCGTAGAAGAGCAGTACAGATGGAATA 835
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 779 CCGATTTCTTGAGGTTTTGGATTAGGCCTGATGGCGTAGAAGAGCAGTTCAGATGGAATA 838
Query 836 AGGATGCCAAGAACTGGACATT-GCTTCAATGGAAACCGAGTACGGAATGTGAGAAATAT 894
||||| || |||||||| ||| ||||||||||||||| || |||||||||||||| |||
Sbjct 839 AGGATATCAGGAACTGGA-ATTTGCTTCAATGGAAACCAAGCACGGAATGTGAGAAGTAT 897
Query 895 AACCGTTGTGGTAATTACAGTGTATGTGATGATAGCAAGGAGTTTGATTCCGGTAAATGC 954
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 AACCGTTGTGGTAATTACAGTGTATGTGATGATAGTAAGGAGTTTGATTCCGGTAAATGC 957
Query 955 AGTTGCATTGATGGGTTTGAGCCTGTTCATCAGGATCAATGGAACAACAAGGATTTCTCA 1014
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 958 AGTTGCATTGATGGATTTGAGCCGGTTCATCAGGATCAATGGAACAACAGGGACTTCTCA 1017
Query 1015 GGTGGCTGC-AAGAGAAGAGTTCCGTTGAACTGTAATCAGAGTGTGGTTGCTGATCAAGG 1073
||||||||| || ||||||||||| |||||||||||||||||| ||||||| | |||||
Sbjct 1018 GGTGGCTGCCAA-AGAAGAGTTCCTTTGAACTGTAATCAGAGTCTGGTTGCAGGTCAAG- 1075
Query 1074 AG-ATGGGTTTAAGGTACTTAAGGGAATTAAGGTGCCTGATTTTGGATCAGtttttttAC 1132
|| ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1076 AGGATGGGTTTACGGTACTTAAGGGAATAAAGGTGCCTGATTTTGGATCAGTTGTTTTAC 1135
Query 1133 ATAACAACTCAGAGACCTGTAAAGATGTATGCGCAAGAAACTGTTCGTGTAAGGCTTATG 1192
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1136 ATAACAACTCAGAGACCTGTAAAGATGTATGCGCAAGGGACTGTTCTTGTAAGGCTTATG 1195
Query 1193 CGGTT-GTATTAGGGATCGGATGCATGATTTGGACCCATGATTTGATCGATATGGAGCAT 1251
|| || ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1196 CG-TTAGTAGTAGGGATCGGATGCATGATTTGGACCCGTGATTTGATCGATATGGAACAT 1254
Query 1252 TTTGAACGCGGTGGAAACTCTATAAACATCCGGCTAGCGGGTTCTGAACTAGGAGGTGGA 1311
||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 1255 TTTGAACGCGGTGGAAACTCTATCAACATCCGGCTAGCGGGTTCTAAACTAGGTGGTGGG 1314
Query 1312 AAGGAAAAATCGAA-ACTTTTGATAATTATTTTCAGTGTTATTGGTGCATTCTTGCTTGG 1370
|||||||| || || ||||| ||||||| ||||||||||||| || |||||||| || ||
Sbjct 1315 AAGGAAAATTC-AACACTTTGGATAATTGTTTTCAGTGTTATAGGAGCATTCTTACTAGG 1373
Query 1371 ATTATGCATTTGGATCTTATGGAAGTTCAAGAAAAGTCTCAAAGCTTTCTTGTGGAAGAA 1430
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1374 ATTATGCATTTGGATCTTATGGAAGTTTAAGAAAAGCCTTAAAGCTTTCTTGTGGAAGAA 1433
Query 1431 GAAAGATCTTC-CAGTTTCTGATATCAGAGAGAACAGTGATTACTCGGTTAAGTCCTCAA 1489
||||||| | | ||||||||||||||| ||||||||| |||||||| ||| | ||
Sbjct 1434 GAAAGATAT-CACAGTTTCTGATATCATAGAGAACAGAGATTACTC----AAG-C-TC-- 1484
Query 1490 GCTCGCCGATCAAACTTCTAGTAGGGGATCAAGTTGACACACCCGATTTGCCAATTTTCA 1549
|| || |||||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1485 GC-CG---ATCAAAGTTCTAGTAGGGGATCAAGTTGACACACCCGATTTACCAATATTCA 1540
Query 1550 GTTTCGACAGCGTAGCCTCAGCAACAGGAGATTTCGCTGAAGAAAACAAGCTTGGACAGG 1609
|||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 1541 GTTTTGACAGCGTAGCCTCAGCTACTGGAGATTTCGCTGAAGAGAACAAGCTTGGACAGG 1600
Query 1610 GCGGATTCGGTACTGTATATAAGGGAAACTTTTCAGAAGGAAGAGAGATTGCAGTGAAGA 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 GCGGATTCGGTACTGTATATAAGGGAAACTTTTCAGAAGGAAGAGAGATTGCAGTGAAGA 1660
Query 1670 GACTATCCGGGAAATCTAAGCAAGGGCTAGAGGAATTCAAGAACGAGATCTTACTAATCG 1729
||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1661 GACTATCAGGGAAATCTAAACAAGGACTAGAGGAGTTCAAGAACGAGATCTTACTAATCG 1720
Query 1730 CGAAACTCCAGCATCGAAATCTTGTTAGATTACTAGGATGTTGCATTGAAGACAACGAGA 1789
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1721 CGAAACTCCAGCATCGGAATCTTGTTAGATTACTAGGATGTTGCATTGAAGACAATGAGA 1780
Query 1790 AAATACTTCTCTATGAATACATGCCAAACAAGAGTTTGGATCGCTTCCTTTTTGATGAGA 1849
| || |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 1781 AGATGCTTCTCTATGAATATATGCCAAACAAGAGTTTGGACCGCTTTCTTTTTGATGAGA 1840
Query 1850 GTAAACGAGGAAGTTTGGACTGGAGAAAACGATGGGAGATCATTGGAGGAATCGCGAGGG 1909
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1841 GTAAACAAGGAAGTTTGGACTGGAGAAAACGATGGGAGGTCATTGGAGGAATCGCGAGGG 1900
Query 1910 GATTGCTTTACTTGCACAGAGACTCAAGACTAAAGATCATTCACCGTGACCTAAAAGCTA 1969
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 GATTACTTTACTTACATAGAGACTCAAGACTAAAGATCATTCACCGTGACCTAAAAGCTA 1960
Query 1970 GCAATATCTTGCTAGACACGGAAATGAATCCAAAGATTTCGGATTTCGGTATGGCTAGGA 2029
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1961 GCAATATCTTGCTAGACACGGAAATGAATCCAAAGATCTCGGATTTCGGTATGGCTAGGA 2020
Query 2030 TCTTCAACTACCGACAAGACCAGGCCAACACGATCCGAGTCGTCGGCACATATGGTTATA 2089
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2021 TATTCAACTACCGACAAGACCATGCCAACACAATCCGAGTCGTCGGCACATATGGTTATA 2080
Query 2090 TGGCTCCGGAGTATGCAATGGAAGGGATATTCTCAGAGAAATCAGATGTGTATAGCTTTG 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2081 TGGCTCCGGAGTATGCAATGGAAGGGATATTCTCAGAGAAATCAGATGTGTATAGCTTTG 2140
Query 2150 GAGTGTTGATATTGGAGATTGTGAGTGGAAGAAAAAACCTTAGCTTTCGAGGGTCTGAAC 2209
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 2141 GAGTGTTGATATTGGAGATTGTGAGTGGAAGAAAAAACGTTAGCTTTCGAGGGACTGATC 2200
Query 2210 ATGGAAGTCTTATCGGTTATGCGTGGCATTTATGGAGCCAAGGAAAGACAAAAGAGCTGA 2269
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2201 ATGGAAGTCTCATTGGTTATGCGTGGCATTTATGGAGCCAAGGAAAGACAAAAGAGATGA 2260
Query 2270 TAGATCCAACTGTGAAGGACACTAGAGACGTAACGGAAGCGATGAGATGCATCCACGTAG 2329
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 2261 TAGATCCAATTGTGAAGGACACTAGAGACGTGACGGAAGCGATGAGATGCATCCACGT-G 2319
Query 2330 GG-ATATTGTGTACACAAGACTCGGTCATTCACCGACCAAACATTGGTTCGGTTTTGTTG 2388
|| || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2320 GGTATGTTGTGTACACAAGACTCGGTCATTCACAGACCAAACATGGGTTCGGTTTTGTTG 2379
Query 2389 ATGTTGGAGAGT-AGAACCAGTCAACTTCCACGTCCGAGACAACCGACCTTCCACTCGTT 2447
|||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2380 ATGTTGGAGAGTCA-AACCAGTCAACTTCCACCCCCGAGACAGCCGACCTTCCACTCGTT 2438
Query 2448 CTTGAACTCCGGTGAGATTGAACTCAACTTGGACGGTCATGATGTTGCCTCGGTCAACGA 2507
||||||||| ||||| |||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 2439 CTTGAACTCTGGTGACATTGAACTCAACTTTGACGGTCACGATGTTGCCTCCGTTAACGA 2498
Query 2508 TGTTACTTTCACAACAATTGTTGGTAGATGA 2538
|||||||||||||||||||||||||||||||
Sbjct 2499 TGTTACTTTCACAACAATTGTTGGTAGATGA 2529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125969193873
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5