BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907307

Length=162
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61415.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   185    8e-47


> AT1G61415.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G61450.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr1:22659631-22660967 FORWARD LENGTH=1081
Length=1081

 Score =  185 bits (100),  Expect = 8e-47
 Identities = 132/147 (90%), Gaps = 4/147 (3%)
 Strand=Plus/Plus

Query  18   TGAAGACAATGAATT-GGGAAGTTTATTGTTGAAAAGGGAGTTTTTCAAAAACGAAGTTC  76
            |||||||| ||||||  |||| |||||||||| |||| |||||| || | ||||||||||
Sbjct  390  TGAAGACAGTGAATTCAGGAA-TTTATTGTTGGAAAGAGAGTTTCTCGACAACGAAGTTC  448

Query  77   GGATGTTGGAGGAGAAGAACTTAGGTGTGAAGAACTCAATTTTGGCTTACATGGA-GTAT  135
            |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||
Sbjct  449  GGATGTTGGAGGAGAAGAACTTAGATGTGAAGAACTCTATTTTGGCTTACATGGAAG-AT  507

Query  136  GAAATGAGGAATCTATTATCTGAATAG  162
            ||||||| ||||||||||||||| |||
Sbjct  508  GAAATGATGAATCTATTATCTGATTAG  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6991887789


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5