BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907308

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61415.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   625    1e-178
  AT1G61450.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   547    3e-155


> AT1G61415.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G61450.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr1:22659631-22660967 FORWARD LENGTH=1081
Length=1081

 Score =  625 bits (338),  Expect = 1e-178
 Identities = 451/505 (89%), Gaps = 10/505 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGGATTCAGGTGCGATTCTATGTCAGATCTCCATTTTCAAGGACATGCTTGATCAG  60
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  31   ATGGAGGATTCAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG  90

Query  61   GTCAATCGGGAAATCGAAGCGAACATTCAGGTGTCGCGAGAGATCGAATCAGAGATCGGA  120
            |||||||||||||||||||| |||||||||||  ||||||||||||||||| ||||||||
Sbjct  91   GTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCACAGATCGGA  150

Query  121  GCGTGTTCTGATATGGGATCGACTCTATCCGTTAAAGAAGCTGAGCTTACTAGATCGTTC  180
               |||||||| | || |||| |||| || || ||||||||||||||||||| |||||||
Sbjct  151  AATTGTTCTGAGACGGAATCGGCTCTGTCTGTCAAAGAAGCTGAGCTTACTAAATCGTTC  210

Query  181  CTTGCTTCTCAGTTCGAGATCAGCGGTTTGATCTCCGTTACAGCCGATTCAAGAAACTCT  240
            ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||
Sbjct  211  CTTGCTTCTCAGTTCGAGATCAATGGTTTGATCTCCGTTACAGCTGATTCAAGAAACTCT  270

Query  241  CTGAAGCTATTGGAGGATGAGATTCATCGCCTGAGAAGTGAGCACAGTGAGCTAATTACA  300
            ||||||||||||||||||||||||  |||  |||||| |||||| |||||||||||||||
Sbjct  271  CTGAAGCTATTGGAGGATGAGATTTGTCGTTTGAGAAATGAGCATAGTGAGCTAATTACA  330

Query  301  AGGCTAACCGAAAAGCAGGCAGGGTTTGTGAATATGTGTTTTCGATTCCAGAAGG-AGAT  359
            || |||||||| |||| || ||| |||||||| ||||||||| | || || |||| ||||
Sbjct  331  AGACTAACCGAGAAGCGGGAAGGTTTTGTGAAGATGTGTTTTGGGTTTCA-AAGGGAGAT  389

Query  360  TGAGGATAGTGAAT-CAAGGAGTTTATTGTCGGAGAGGGAGTTTCTAGAAAACGAAGTTT  418
            ||| || ||||||| || ||| |||||||| ||| || |||||||| || ||||||||| 
Sbjct  390  TGAAGACAGTGAATTCA-GGAATTTATTGTTGGAAAGAGAGTTTCTCGACAACGAAGTTC  448

Query  419  GGAT-TATGGAG-ATGAAGAACATT-GATGTGAAGAACTCGATTTTGGCTTACATGGAAG  475
            |||| | ||||| | ||||||| || |||||||||||||| |||||||||||||||||||
Sbjct  449  GGATGT-TGGAGGA-GAAGAAC-TTAGATGTGAAGAACTCTATTTTGGCTTACATGGAAG  505

Query  476  ATGAAATGATGAATCTATTATCTGA  500
            |||||||||||||||||||||||||
Sbjct  506  ATGAAATGATGAATCTATTATCTGA  530


> AT1G61450.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G61415.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr1:22673259-22673993 FORWARD LENGTH=498
Length=498

 Score =  547 bits (296),  Expect = 3e-155
 Identities = 384/426 (90%), Gaps = 7/426 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGGATTCAGGTGCGATTCTATGTCAGATCTCCATTTTCAAGGACATGCTTGATCAG  60
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   ATGGAGGATTCAGGAGCGATTCTATGTCAGATCTCCATTTTCAAGGACATGCTTGATCAG  123

Query  61   GTCAATCGGGAAATCGAAGCGAACATTCAGGTGTCGCGAGAGATCGAATCAGAGATCGGA  120
            |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||
Sbjct  124  GTCAATCGGGAAATCGAAGCAAACATTCAGGTGACGCGAGAGATCGAATCACAGATCGGA  183

Query  121  GCGTGTTCTGATATGGGATCGACTCTATC-CGTTAAAGAAGCTGAGCTTACTAGATCGTT  179
            ||||||||||| || | |||  |||| || | | || ||| |||||||||||||||||||
Sbjct  184  GCGTGTTCTGAGATTGAATCTTCTCTGTCTC-TCAAGGAACCTGAGCTTACTAGATCGTT  242

Query  180  CCTTGCTTCTCAGTTCGAGATCAGCGGTTTGATCTCCGTTACAGCCGATTCAAGAAACTC  239
            |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  243  CCTTGCTTCTCAATTCGAGATCAGCGGTTTGATCTCCGTTACAGCTGATTCAAGAAACTC  302

Query  240  TCTGAAGCTATTGGAGGATGAGATTCATCGCCTGAGAAGTGAGCACAGTGAGCTAATTAC  299
            |||||||||||||||||||||||||  | || | ||||||||||||||||||||||||||
Sbjct  303  TCTGAAGCTATTGGAGGATGAGATTTGTTGCTTAAGAAGTGAGCACAGTGAGCTAATTAC  362

Query  300  AAGG-CTAACCGAAAAGCAGGCAGGGTTTGTGAATATGTGTTTTCGATTCCAGAAG-GAG  357
            || | |||||||| |||| || |||||||||||| ||||||||| ||||||| ||| |||
Sbjct  363  AAAGACTAACCGAGAAGCGGGAAGGGTTTGTGAAGATGTGTTTTGGATTCCA-AAGAGAG  421

Query  358  ATTGAGGATAGTGAAT-CAAGGAGTTTATTGTCGGAGAGGGAGTTTCTAGAAAACGAAGT  416
            ||||| || ||||||| || ||||||||||| | |||| ||||  ||| |||||||||||
Sbjct  422  ATTGAAGACAGTGAATTCA-GGAGTTTATTGGCTGAGAAGGAGCGTCTGGAAAACGAAGT  480

Query  417  TTGGAT  422
            | ||||
Sbjct  481  TCGGAT  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5