BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907311
Length=354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61415.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 368 2e-101
AT1G61450.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 340 4e-93
> AT1G61415.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G61450.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr1:22659631-22660967 FORWARD LENGTH=1081
Length=1081
Score = 368 bits (199), Expect = 2e-101
Identities = 239/259 (92%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 93 GGTCAATCGGGAAATCGAAGCGAACATTCAAGTGACGCGAGAGATCGAATCACATATCGG 152
||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||||
Sbjct 90 GGTCAATCGGGAAATCGAAGCAAACATTCAGGTCACGCGAGAGATCGAATCACAGATCGG 149
Query 153 AAATTGTTCTGAGATGGAATCTTCTCTATCTGTTAAAGAAGCTGAGCTTACTAAATCGTT 212
|||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 150 AAATTGTTCTGAGACGGAATCGGCTCTGTCTGTCAAAGAAGCTGAGCTTACTAAATCGTT 209
Query 213 CATTGCTTCTCAGTTCGAGATCAGCGGTTTGATCTCTGTAACAGCTGATTCAAGAAACTC 272
| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 210 CCTTGCTTCTCAGTTCGAGATCAATGGTTTGATCTCCGTTACAGCTGATTCAAGAAACTC 269
Query 273 TCTGAAGCTACTGGAGGATGATATTTGTCGCCTGAGAAATGAGCACAGTGAGCTAATTAC 332
|||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct 270 TCTGAAGCTATTGGAGGATGAGATTTGTCGTTTGAGAAATGAGCATAGTGAGCTAATTAC 329
Query 333 AAGGCTAACCGAGAAGCGG 351
||| |||||||||||||||
Sbjct 330 AAGACTAACCGAGAAGCGG 348
Score = 110 bits (59), Expect = 1e-23
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGATTCAGGTGCGATTCTATGTCAGATCTCCATTTTCAAGGACATGCTTGATCAG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 31 ATGGAGGATTCAGGTGCGATTCTATGTCAAATCTCCATTTTCAAGGACATGCTTGATCAG 90
Query 61 GT 62
||
Sbjct 91 GT 92
> AT1G61450.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61415.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:22673259-22673993 FORWARD LENGTH=498
Length=498
Score = 340 bits (184), Expect = 4e-93
Identities = 235/260 (90%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 93 GGTCAATCGGGAAATCGAAGCGAACATTCAAGTGACGCGAGAGATCGAATCACATATCGG 152
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 123 GGTCAATCGGGAAATCGAAGCAAACATTCAGGTGACGCGAGAGATCGAATCACAGATCGG 182
Query 153 AAATTGTTCTGAGATGGAATCTTCTCTATCTGTTAAAGAAGCTGAGCTTACTAAATCGTT 212
| ||||||||||| ||||||||||| ||| | || ||| |||||||||||| ||||||
Sbjct 183 AGCGTGTTCTGAGATTGAATCTTCTCTGTCTCTCAAGGAACCTGAGCTTACTAGATCGTT 242
Query 213 CATTGCTTCTCAGTTCGAGATCAGCGGTTTGATCTCTGTAACAGCTGATTCAAGAAACTC 272
| |||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 243 CCTTGCTTCTCAATTCGAGATCAGCGGTTTGATCTCCGTTACAGCTGATTCAAGAAACTC 302
Query 273 TCTGAAGCTACTGGAGGATGATATTTGTCGCCTGAGAAATGAGCACAGTGAGCTAATTAC 332
|||||||||| |||||||||| |||||| || | |||| |||||||||||||||||||||
Sbjct 303 TCTGAAGCTATTGGAGGATGAGATTTGTTGCTTAAGAAGTGAGCACAGTGAGCTAATTAC 362
Query 333 AAGG-CTAACCGAGAAGCGG 351
|| | |||||||||||||||
Sbjct 363 AAAGACTAACCGAGAAGCGG 382
Score = 110 bits (59), Expect = 1e-23
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGATTCAGGTGCGATTCTATGTCAGATCTCCATTTTCAAGGACATGCTTGATCAG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 ATGGAGGATTCAGGAGCGATTCTATGTCAGATCTCCATTTTCAAGGACATGCTTGATCAG 123
Query 61 GT 62
||
Sbjct 124 GT 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16588357170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5