BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907319
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61330.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 1679 0.0
AT1G61320.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 883 0.0
> AT1G61330.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr1:22622975-22624527 FORWARD
LENGTH=1344
Length=1344
Score = 1679 bits (909), Expect = 0.0
Identities = 1214/1358 (89%), Gaps = 34/1358 (3%)
Strand=Plus/Plus
Query 1 ATGTCAGAATCCTCAAATAAGCAGATGAAACTCATCAAAAGAATT-CCTGATGATTTGGT 59
||||||||| | || |||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 1 ATGTCAGAAGCGTCTAATAAGCAGATGAAACTCATCAAAAG-ATTGTCTGATGAGTTGGT 59
Query 60 GGAGTGCATCTTGTCATTTCTTCCAATCCAATCT-CTTTTACAAAACCGTGTTTTGTCGA 118
||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||||||
Sbjct 60 GGAGTGCATCTTGTCATTTCTTCCAGTCCAATCTAC-TTTACAACACCGTGTTTTGTCGA 118
Query 119 AGAGATTTAGGGACACATGGAAACAATCTCGCGACCTCGACTTT-GGCGAAATGTTTTCT 177
|||||| ||||||||||||||| | ||||||||||||||| ||| ||| ||| ||||||
Sbjct 119 AGAGATATAGGGACACATGGAAGCTATCTCGCGACCTCGA-TTTCAGCGGAATATTTTCT 177
Query 178 GTCAGACATAGTCAACT-AGAGGCTGTACGCATAATCGAAAACATTTTTAATCAGCACAA 236
||||||| ||||||| | |||||||||||||||||||||| || |||||| ||||||| |
Sbjct 178 GTCAGACGTAGTCAA-TCAGAGGCTGTACGCATAATCGAAGACGTTTTTATTCAGCACCA 236
Query 237 AGGACCAGAGATTAACCGATTTGTTTTGTCTCTCAACCATATCGGTGTGGAGGATAAGAT 296
|||||||||||| |||| ||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 237 AGGACCAGAGATCGACCGGTTTGTTTTGTCTCTCGACCATACCGGCGTGGAGGATAAGAT 296
Query 297 ACTTTCGTGGATCAG-TACGTGTCTTCGTAAAAACATCAAAGAGCTTGTGCTAGATTTCT 355
|||||||||| || | |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 297 ACTTTCGTGGGTC-GATACGTGTCTTCGTAAAAACATCAAAGAGCTTGTGTTGGATTTCT 355
Query 356 CGAGATCCAAGAAAGTTATGGTGATCCCAGTCGATTTCTCGTCCATCGAGACACTAACAG 415
| || |||||||| ||||||| ||||||| || ||||||| |||| ||||||||| || |
Sbjct 356 CAAGCTCCAAGAAGGTTATGGAGATCCCACTCAATTTCTCATCCAGCGAGACACTTACTG 415
Query 416 TTTTGAAACTGCAATGGTGTAAATTTGAAATACCGGATAATCTTCCAAAAGGTCTAAGGC 475
||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 416 TTTTGAAGCTGCAATGGTGTAGATTTGAAATACCGAATAATCTTCCAAAAGGTCTAAGGC 475
Query 476 TCTTG-AGAACACTTTCGCTCATGCAGACCGAGCTGACTAAAGAGATGATAGATGCGATT 534
||||| || |||||||||||||||| ||| ||| | || || || ||||||||| | |||
Sbjct 476 TCTTGAAG-ACACTTTCGCTCATGCGGACTGAGGTAACGAATGAAATGATAGATTCAATT 534
Query 535 TTCAACAACTGTATCCACCTCGAGTCGCTTGCACTAGTCAAATGCCAAATG--T----AC 588
||||||||||| |||||||| |||||||||| ||||||||||||||||||| | |
Sbjct 535 TTCAACAACTGCATCCACCTTGAGTCGCTTGAACTAGTCAAATGCCAAATGTCTGGGAAT 594
Query 589 GGGATATTGAGCATATACGCTCATGATCATAAGAAGTTCAAGTCGTTGGTTGTGTCTTCA 648
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 595 GGGATACTGACCATATACGCTCATGATCATAAGAAGTTCAAGTCGTTGGTCGTGTCTTGT 654
Query 649 ATGCCAAATCTTTTGTGCATCGTTTTGCATGCACCCACTCTTGAAAGTTACAAGTATGAT 708
||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 655 ATGCCAAATCTTTTGAGCATCTTTTTGGATGCACCCACTCTTGAATGTTACAAGTATGAT 714
Query 709 GGATATGCCAGGACAATCCAGGTTTTGAGA-GTGAATGCACTT-AAGGAGGGAGAATTTC 766
|||||||||| ||| ||| | ||||| | | || ||||||||| || |||| ||||||||
Sbjct 715 GGATATGCCAAGACCATCAACGTTTT-AAAGGTTAATGCACTTGAA-GAGGCAGAATTTC 772
Query 767 ATTATAATCGAAGTAAGAGTAGGCATTCGTCTGCCATGGTGGTTGGTACTATGCGAGCCT 826
|||||| ||||||||| || |||||||| |||| || |||||||| || ||||| |||||
Sbjct 773 ATTATAGTCGAAGTAAAAGAAGGCATTCTTCTGACACGGTGGTTGATAGTATGCTAGCCT 832
Query 827 ATACAGCAGTTCATGTCCTCACAACGACAAACATCTTGCTTGAGGCTCTCACGTATAGAT 886
| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 833 GTTCAGCAGTTCATGCCCTCACAACGACAAACATCTTGCTTGAGGCAATCACGTATAGAT 892
Query 887 ATC-CAGGAGGGAAACTGGAAAAGCCGCTTTTCAAGTTTGAGAATTTAAGAGAATTCAAG 945
| | | |||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 893 A-CTTAAAAGGGAAACTGGAAAAGCCGCTTTTCAAGTTTGAGAACTTGAGAGAATTCAAG 951
Query 946 ATTTTCCTTAAAGCTCCAACGTTTTGCACTCTTTTTGACATCGCTGAATTCCTTAAAGAG 1005
|||||| |||| |||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 952 ATTTTCTTTAAGGCTCCAACATTTTGCACTCTCTTTGATATCGCTGAATTCCTTAAAGAG 1011
Query 1006 TGCCCTAAACTCGAACATG-TTATCATCGATATTC-GTAATTTCACATTTGAGCCTCAAT 1063
||||||||||||||||| | ||||||| ||||||| | |||||||||||||| ||||||
Sbjct 1012 TGCCCTAAACTCGAACA-GTTTATCATTGATATTCAG-AATTTCACATTTGAACCTCAAA 1069
Query 1064 TGTATTTCTGGGAGACGCATCACAAGGCGCAGATTCAGAATAAC-TCGAATAACAACTAC 1122
||||||| ||||||| ||||| |||||||||||||||||| || |||||||||||||||
Sbjct 1070 TGTATTTTTGGGAGATACATCATAAGGCGCAGATTCAGAAT-ACTTCGAATAACAACTAC 1128
Query 1123 CTTTTGAAGTGTCTCACGGACGTCAAGATCATTGGCTATAAAGGCCATTGGCATGAGCTT 1182
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1129 CTTTTGAAGTGTCTCACGGACGTGAAGATCATTGGCTATAAAGGCCACTGGCATGAGCTT 1188
Query 1183 GATATGGTAGAGTTCTTTGTCAAGAACGCACCATCTCTAAAGAGGTTGGAGTTAGAGATG 1242
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1189 GATATAGTAGAGTTCTTTGTCAAGAACGCACCATCTCTAAAGAGGTTGGAGTTACAGATG 1248
Query 1243 CCTAAGAACGCTAAGAAC-ATTGCTCACACCCCAGAT-TATGCAAGGATTAAGTTCATAA 1300
||||||||||| |||||| || ||||||||||||||| | ||||||||| ||| ||||||
Sbjct 1249 CCTAAGAACGCGAAGAACGAT-GCTCACACCCCAGATGT-TGCAAGGATAAAGCTCATAA 1306
Query 1301 AAAACATATTTCCAGGGATTAAAGTTACCGAAGTTTAA 1338
||| ||||||| ||||| ||||||||||||||||||||
Sbjct 1307 AAACCATATTTTCAGGGGTTAAAGTTACCGAAGTTTAA 1344
> AT1G61320.1 | Symbols: | FBD / Leucine Rich Repeat domains containing
protein | chr1:22617370-22619853 FORWARD LENGTH=1515
Length=1515
Score = 883 bits (478), Expect = 0.0
Identities = 1108/1396 (79%), Gaps = 107/1396 (8%)
Strand=Plus/Plus
Query 1 ATGTCAGAATCCTCAAATAAGCA-GATGAAA-CTCA-TCAAAAGAATTCCTGATGATTTG 57
||| ||||||| ||||||||| | ||||||| || | | ||| | ||||||| ||| ||
Sbjct 34 ATGGCAGAATCATCAAATAAG-AGGATGAAACCT-AGTGAAACG-GTTCCTGAAGATGTG 90
Query 58 GTGG-AGTGCATCTTGTC-A--TTTCTTCCAATCCAATCTCTTTTACAAAAC-CGTGTTT 112
||| | | ||| |||| | | |||||| |||||||||| ||| | ||| ||||| |
Sbjct 91 TTGGAACT-CATGATGTCTACGTATCTTCCCGTCCAATCTCTGTTA-ACAACTCGTGTGT 148
Query 113 TGTCGAAGAGATTTAG-G-GACAC-ATGGAAACAATCTCGCGACCTCGACTTT-GGCGAA 168
|||| || |||||| | | ||| | | || || |||| |||||||| ||| | | |
Sbjct 149 TGTCCAAAAGATTTCGCGAGAC-CGA-GG-TACGTTCTCTTGACCTCGA-TTTCAGTGGA 204
Query 169 ATGTTTTCT-GTCAGACATAGTCAACTAGAGGCTGTACGCATAATCGAAAACA-TTTTTA 226
|| | |||| | |||| | || || |||| | ||| |||| |||||||| | | || |
Sbjct 205 ATATATTCTAG-AAGACGTCGTAAAGTAGAAGTTGTTGGCATCATCGAAAA-AGTGTTCA 262
Query 227 ATCAGCACAAAGGACCAGAGATTAACCGATTTGTT-TTGTCTCTCAACCATATCGGTGTG 285
|||| || |||||| |||||||| ||||||| ||| | | |||||| ||||| || ||
Sbjct 263 ATCAACATAAAGGATCAGAGATTCACCGATTCGTTCTACT-TCTCAATCATATTGGGGTA 321
Query 286 GAGGATAAGATAC-TTTCGTGGATCAGTACGTGTCTTCG-TAAAAACATCAAAGAGCTTG 343
|| ||||| || | | || |||| || ||| ||| || | ||||||||||| |||||||
Sbjct 322 GAAGATAAAAT-CATCTCATGGACCAATACATGT-TTTGACAAAAACATCAAGGAGCTTG 379
Query 344 TGC-TAGATTTCTCGAGATCCAAG-AAAGTTATGGTGAT-CCCAGTCGATTTCTCGTCCA 400
| | ||||||| || | || | || |||||||||| || |||| | ||||||||| |
Sbjct 380 T-CTTAGATTTTTCAAAAT-CTAGAAAAGTTATGGCCATCCCCA-TTGATTTCTCGGCTG 436
Query 401 TCGAGACACTAAC-AGTTTTGAAACTGCAATGGTGTAAATTTGAAATACCGGATA-ATCT 458
| |||| || || ||||||||| |||| ||||||||||||||||||||| |||| ||
Sbjct 437 TGGAGAGTCT-ACAAGTTTTGAAGCTGCGATGGTGTAAATTTGAAATACCTGATAGTTC- 494
Query 459 TCCAAAAGGTCTAAGGCTCTTG-AGAACACTTTCGCTCATGCAG-A-CCGAGCTGACTAA 515
||||||||||||| ||||||| || ||||| ||||| |||| | | || || ||| |
Sbjct 495 CCCAAAAGGTCTAAAGCTCTTGAAG-ACACTCTCGCTTATGC-GTACCCAAG-TGA-TGG 550
Query 516 AG-AGA-TGATAGATGCGATTTTCAACAACTGTATCCACCTCGAGTCGCTTGCACTAGTC 573
| ||| | || ||||| || ||||||||||| |||||||| |||||||||| |||| ||
Sbjct 551 TGAAGACT-ATCGATGCAATCTTCAACAACTGCATCCACCTAGAGTCGCTTGAACTAATC 609
Query 574 AAATGCCAAATGTACGGGATATTGAGCATATACGCTCATG-ATCATAAGAAGTTCAAGTC 632
|||||| ||| | |||||||| |||||| ||||| | |||||||||||||||||||
Sbjct 610 GAATGCCGTATGGATGGGATATTAAGCATACGTGCTCA-GAATCATAAGAAGTTCAAGTC 668
Query 633 G-TTGGTTGTGTCTTCAATGCCAAATCTTTTG-TGCAT-CGTTTTGCATGCACCCACTCT 689
| || |||||||||| ||||| ||| | | ||| || ||| | ||||||||| |
Sbjct 669 GCTT-GTTGTGTCTTTTATGCCGGATC-TCCGACACATCCG-GTTGGACGCACCCACT-T 724
Query 690 T-GAAAGTTACAAGTATGATGGATATGCCA---G-GACAATCCAGGTTTTGAGAGTGAAT 744
| |||| ||||||||||||||||||| || | | || || || ||| | |||
Sbjct 725 TAGAAAACTACAAGTATGATGGATATGTCATTTGTGTTAA--CA--TTCTGATAACAAAT 780
Query 745 GCACTTAAGGAGGGAGAATTTC-ATTATAATCGAAGTAAGAG----TA--GGCATTCGTC 797
|||||||| |||| | ||| || | || | ||| | | | | || || ||
Sbjct 781 GCACTTAAAGAGGCA-AATCTCTACTACACTCGGATTCGGCGTTTATACCACCAAAAATC 839
Query 798 TGCCATGGTGGTTGG-TACTA-TGCGAGCCTATAC-AGCAGTTCA-TGTCCTCACAACGA 853
|| || ||| ||| ||| | ||||| |||||| || | || | ||||||| ||||||
Sbjct 840 TG--AT-TTGG-TGGATAC-ACTGCGATTCTATACAAG-ACTT-ACTGTCCTCGCAACGA 892
Query 854 CAAACATCTTGCTTGAGGCTCTCACGTATAGATATC--CAGGAG--GGAA-ACTGGAAAA 908
||| |||||| ||||||||||| ||| | ||||| | | |||| |||| ||| |||||
Sbjct 893 CAACCATCTTTCTTGAGGCTCTTACGAAGAGATA-CGTC-GGAGAAGGAAGACTAGAAAA 950
Query 909 GCCGCTTTTCAAGTTTGAGAATTTAAGAGAATTCAAGATTTTCC-TTA-AAGCTCCAACG 966
|||| ||||||||||||||| |||| ||||||||||| ||||| ||| || |||||||
Sbjct 951 TCCGCCTTTCAAGTTTGAGAACTTAACAGAATTCAAGA-TTTCCTTTATAA-CTCCAACA 1008
Query 967 TTTTGCACTCTTTTTGACATCGCTGAATTCCTTAAAGAGTGCCCTAAACTCGAACATGTT 1026
||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 1009 TTTTGCACTCTATTTGACATCGCTGAATTCCTCAAAGAGTGCCCTAAACTCAAACAGGTT 1068
Query 1027 ATCATCGATATTC-GTAATTTCACATTTGAGCCTCAATTGTATTTCTGGGAGACGCATCA 1085
| |||||||||| | |||||||||||||| |||||| ||||||| ||||||| |||||
Sbjct 1069 GTGATCGATATTCAG-AATTTCACATTTGAACCTCAAATGTATTTTTGGGAGATACATCA 1127
Query 1086 CAAGGCGCAGATTCAGAATAAC-TCGAATAACAACTACCTTTTGAAGTGTCTCACGGACG 1144
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1128 TAAGGCGCAGATTCAGAAT-ACTTCGAATAACAACTACCTTTTGAAGTGTCTCACGGACG 1186
Query 1145 TCAAGATCATTGGCTATAAAGGCCATTGGCATGAGCTTGATATGGTAGAGTTCTTTGTCA 1204
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1187 TGAAGATCATTGGCTATAAAGGCCACTGGCATGAGCTTGATATAGTAGAGTTCTTTGTCA 1246
Query 1205 AGAACGCACCATCTCTAAAGAGGTTGGAGTTAGAGATGCCTAAGAACGCTAAGAAC-ATT 1263
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1247 AGAACGCACCATCTCTAAAGAGGTTGGAGTTACAGATGCCTAAGAACGCGAAGAACGAT- 1305
Query 1264 GCTCACACCCCAGAT-TATGCAAGGATTAAGTTCATAAAAAACATATTTCCAGGGATTAA 1322
||||||||||||||| | ||||||||| ||| ||||||||| ||| ||| ||||| ||||
Sbjct 1306 GCTCACACCCCAGATGT-TGCAAGGATAAAGCTCATAAAAACCATCTTTTCAGGGGTTAA 1364
Query 1323 AGTTACCGAAGTTTAA 1338
||||||||||||||||
Sbjct 1365 AGTTACCGAAGTTTAA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5