BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907322
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61280.1 | Symbols: | Phosphatidylinositol N-acetylglucosam... 551 2e-156
AT2G39445.1 | Symbols: | Phosphatidylinositol N-acetylglucosam... 296 1e-79
> AT1G61280.1 | Symbols: | Phosphatidylinositol N-acetylglucosaminyltransferase,
GPI19/PIG-P subunit | chr1:22603586-22604081
FORWARD LENGTH=414
Length=414
Score = 551 bits (298), Expect = 2e-156
Identities = 367/400 (92%), Gaps = 5/400 (1%)
Strand=Plus/Plus
Query 70 GAAGTACACGGAACAAAACCTTGTGAGGTTTATGGATTTGTTGGATCCATTTCGATTGTT 129
|||||||||||| ||||| ||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct 19 GAAGTACACGGACCAAAAACTTCCGAGGTTTATGGTTTTGTAGGATCTATTTCGATTGTT 78
Query 130 GTTGCCACTGTGGTCTTCTTGATTTGGGCTTATGTACCAGATAAGTTCTTAGAGTCTTTA 189
|||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 79 GTTGCCACTGTGATCTTCTTAATTTGGGGATATGTACCAGATAAGTTCTTAGAGTCCATA 138
Query 190 GGCATTTATTACTACTACCCGAGCAAGTACTGGGCTATGGCGATGCCGATGTATTTGATG 249
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 139 GGCATTTA-T--TACTACCCGAGCAAGTACTGGGCCATGGCGATGCCGATGTATTCGATG 195
Query 250 GTGACTCTGTTCTTAGCTTTAGTGTTTTACATTGGTCTCAACTTCATGTCTACTTC-AAC 308
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 196 GTGACTCTGTTAGTAGCTTTGGTGTTTTACATTGGTCTCAACTTCATGTCTACTTCAAAA 255
Query 309 CTCAACCTCTTTCAATACTCTGTTTGATGAGTACAGCAGAGAAGATGTGGATTTTCTTTC 368
| |||||||| |||||||| |||||||||| ||||| |||||||||||| |||||||| |
Sbjct 256 C-CAACCTCTCTCAATACTTTGTTTGATGACTACAGTAGAGAAGATGTGAATTTTCTTCC 314
Query 369 TTTGATGAAGAATGGGGATGATAGGCCAATAGATCCAATCTCTGACATTGATATTACAAG 428
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 315 TTTGATGAAGAATGGGGAAGACAGGCCAATAGATCCAATCTCTGACATTGATATTACAAG 374
Query 429 AATCAACGATCTTATGTTCGATTCACACCTTGCCAAGTGA 468
||||||||||||||||||||||||||| ||||||||||||
Sbjct 375 AATCAACGATCTTATGTTCGATTCACATCTTGCCAAGTGA 414
> AT2G39445.1 | Symbols: | Phosphatidylinositol N-acetylglucosaminyltransferase,
GPI19/PIG-P subunit | chr2:16470025-16471246
REVERSE LENGTH=667
Length=667
Score = 296 bits (160), Expect = 1e-79
Identities = 317/391 (81%), Gaps = 17/391 (4%)
Strand=Plus/Plus
Query 70 GAAGTACACGGAACAAAACCTTGTGAGGTTTATGGATTT-GTTGGATCCATTTCGATTGT 128
||||| || ||| | ||||| | ||||| || || ||| || ||||| || |||| |||
Sbjct 278 GAAGTGCATGGACCTAAACCCTCAGAGGTGTACGG-TTTCGTAGGATCGATATCGACTGT 336
Query 129 TGTTGCCACTGTGGTCTTCTTGATTTGGGCTTATGTACCAGATAAGTTCTTAGAGTCTTT 188
||||||||| || |||||||| | ||||| ||||| ||||||||||| || |||||| |
Sbjct 337 TGTTGCCACAGTCATCTTCTTGGTATGGGCATATGTTCCAGATAAGTTGTTGGAGTCTAT 396
Query 189 AGGCATTTATTACTACTACCCGAGCAAGTACTGGGCTA-TGGCGATGCCGATGTATTTGA 247
||| || | | |||||||| || | ||| |||| || |||| ||||| | ||||||||
Sbjct 397 AGGAATCCA-T--TACTACCCTAGTAGGTATTGGG-TATTGGCTATGCCAACGTATTTGA 452
Query 248 TGGTGACTCTGTTCTTAGCTTTAG-TGTTTTACATTGGTCTCAACTTCAT-GTCTACTTC 305
||||||||||| | |||||||| | | ||||||||||||||||||||||| | | ||| |
Sbjct 453 TGGTGACTCTGATGTTAGCTTTGGCT-TTTTACATTGGTCTCAACTTCATCG-CCACTCC 510
Query 306 AACCTCAACCTCTTTCAATA-CTCTGTTTGATGAGTACAGCAGAGAAGAT-GTGGATTTT 363
| || |||||||| |||||| || |||||||||||||||| |||||| | ||| ||||
Sbjct 511 ACCCCCAACCTCTCTCAATACCT-TGTTTGATGAGTACAGTAGAGAACCTGGTGAATTTG 569
Query 364 CTTTCTTTGAT-GAAGAATGGGGATGATAGGCCAATAGATCCAATCTCTGACATTGATAT 422
| | || ||| || ||| || || || ||||| ||||||||||||||||||||||||||
Sbjct 570 C-TGCTGGGATGGAGGAA-GGTGAAGACAGGCCTATAGATCCAATCTCTGACATTGATAT 627
Query 423 TACAAGAATCAACGATCTTATGTTCGATTCA 453
||||||||| || |||||||||||| |||||
Sbjct 628 TACAAGAATAAATGATCTTATGTTCAATTCA 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5