BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907330

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61226.1 | Symbols: MIR846A | MIR846a; miRNA | chr1:22577417...   159    2e-38
  AT1G61224.1 | Symbols: MIR842A | MIR842a; miRNA | chr1:22577113...   132    4e-30
  AT1G61230.1 | Symbols:  | Mannose-binding lectin superfamily pr...   108    8e-23


> AT1G61226.1 | Symbols: MIR846A | MIR846a; miRNA | chr1:22577417-22577691 
FORWARD LENGTH=275
Length=275

 Score =  159 bits (86),  Expect = 2e-38
 Identities = 93/96 (97%), Gaps = 2/96 (2%)
 Strand=Plus/Plus

Query  285  GAAGCT-AAAGGTTGCGGGAGGCAAGCAGTGGGATAATGATCTGCAAGTGGAA-CTTCTT  342
            |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  143  GAAGCTGAATGGTTGCGGGAGGCAAGCAGTGGGATAATGATCTGCAAGTGGAAACTTCTT  202

Query  343  ACTTTTATCATATCCCATCAGCTCGAAAGTCTTGAT  378
            ||||||||||||||||||||||||||||||||||||
Sbjct  203  ACTTTTATCATATCCCATCAGCTCGAAAGTCTTGAT  238


> AT1G61224.1 | Symbols: MIR842A | MIR842a; miRNA | chr1:22577113-22577219 
FORWARD LENGTH=107
Length=107

 Score =  132 bits (71),  Expect = 4e-30
 Identities = 89/97 (92%), Gaps = 3/97 (3%)
 Strand=Plus/Plus

Query  1    ATGGATCCGACCATGATGGTGTTGCAGAAACTTATGTACGAGGTAGTTAT---CCAGGGG  57
            ||| |||||||||||||||||||||||||| ||||||| || ||||||||   |||||| 
Sbjct  11   ATGAATCCGACCATGATGGTGTTGCAGAAATTTATGTATGATGTAGTTATTGTCCAGGGA  70

Query  58   TCGAAACACCATCATGGTCAGATCCGTCATCCCACTT  94
            |||||||||||||||||||||||||||||||||||||
Sbjct  71   TCGAAACACCATCATGGTCAGATCCGTCATCCCACTT  107


> AT1G61230.1 | Symbols:  | Mannose-binding lectin superfamily 
protein | chr1:22578951-22580781 FORWARD LENGTH=1518
Length=1518

 Score =  108 bits (58),  Expect = 8e-23
 Identities = 70/76 (92%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  516  GATTGAGATTGACCATCTTAACAATGAGCATCTTGAATCTGTTGAGGGTTATTACAACAA  575
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct  6    GATTGAGATTGACCATCTTAACAATGAGCATCTTGAATCTGTTGAGAGTTATTACGACGA  65

Query  576  TACATCCTGTAACATT  591
            | || ||||| |||||
Sbjct  66   TGCACCCTGTTACATT  81



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28583229643


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5