BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907346
Length=417
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61095.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 337 6e-92
AT1G61093.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 318 2e-86
AT1G61097.1 | Symbols: | Expressed protein | chr1:22506919-225... 209 1e-53
AT1G61090.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 132 3e-30
> AT1G61095.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61093.1);
Has 17 Blast hits to 13 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22504514-22505511
REVERSE LENGTH=700
Length=700
Score = 337 bits (182), Expect = 6e-92
Identities = 326/393 (83%), Gaps = 20/393 (5%)
Strand=Plus/Plus
Query 32 TTCACTCATCGATGAGACCAGAAACTCTCAAGGTTATTCAGCAACAGCTCACAGCTATGA 91
|||| ||| ||||||||||||||||||| |||||||||| |||||||||||| ||||
Sbjct 125 TTCAATCAAAGATGAGACCAGAAACTCTCGCGGTTATTCAGAAACAGCTCACAGAAATGA 184
Query 92 AGGCGGT-TCAG-GAAACTAAAGA-CGACGAAGAAGTaaaaaaaaTCATGGATGAGTACA 148
| || || |||| |||| | | || |||| | ||||||| | | |||| | |||| ||
Sbjct 185 AAGC-GTCTCAGAGAAA-T-ATGACCGACCACGAAGTAATACGAGCCATGAACGAGTTCA 241
Query 149 TGTTCTGTTTTAG-AAACTGTTACACTGAGGCTGAAATTGTGAATCACATCA-CCCAGAA 206
||||||| ||| | |||||||||||| ||| ||||| ||||||||| || | |||||
Sbjct 242 TGTTCTG-TTTCGAAAACTGTTACACAGAGAATGAAACTGTGAATCATAT-AGTTCAGAA 299
Query 207 GATTCCTTCTTCA-GTACCTGCGGA-AGTG--AGAAATTTCTGTCAGGGA-TTTATAGCC 261
| ||||||||| | ||||| | | |||| |||| ||||| ||| | | | ||||||
Sbjct 300 GTTTCCTTCTT-ACGTACC--C-AAGAGTGTAAGAAGTTTCTTTCA-GAAGTCCATAGCC 354
Query 262 GTGATCGATAAAGATTTAAGAGACGTGTATCTCAAGGATGCTGAAGATTGTGCTAGTGAA 321
|||||||| |||| | |||||| | |||||| | |||||||||||| |||||||||| |
Sbjct 355 TTGATCGATGAAGAGTCAAGAGAGGCGTATCTTACGGATGCTGAAGAATGTGCTAGTGTA 414
Query 322 AGAATGAGTCAGGCTCGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGGTGAGGCCAGT 381
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AGAAGGAGTCAGGCTCGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGGTGAGGCCAGT 474
Query 382 ACATCTCACAAATGTGAACCTAACTGCGACAAA 414
||||||||||||||||||||||||||| |||||
Sbjct 475 ACATCTCACAAATGTGAACCTAACTGCAACAAA 507
> AT1G61093.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G61095.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr1:22501885-22502941 REVERSE LENGTH=731
Length=731
Score = 318 bits (172), Expect = 2e-86
Identities = 324/394 (82%), Gaps = 24/394 (6%)
Strand=Plus/Plus
Query 32 TTCACTCATCGATGAGACCAGAAACTCTCAAGGTTATTCAGCAACAGCTCACAGCTATGA 91
|||| ||| ||||||||||||||||||| |||||||||| ||||||||||| || |
Sbjct 129 TTCAATCAAAGATGAGACCAGAAACTCTCGCGGTTATTCAGAAACAGCTCACAAAAATTA 188
Query 92 AGGCGGTTCAG-GAAACTAAAGA-CGACGAA-GAAGTaaaaaaaaT-CATGGATGAGTA- 146
| |||| |||| |||| | | || |||| || ||||| | | || |||||| ||| |
Sbjct 189 AAGCGGCTCAGAGAAA-T-ATGACCGAC-AACGAAGT-ACTACGATCCATGGACGAG-AT 243
Query 147 CATGTTCTGTTTTAG-AAACTGTTACACTGAGGCTGAAA-TTGTGAATCACATCACCCAG 204
||||||||| ||| | |||||||||||| |||| ||||| || | | ||| ||| |||||
Sbjct 244 CATGTTCTG-TTTCGAAAACTGTTACACAGAGGATGAAACTT-TTACTCATATCGCCCAG 301
Query 205 AAGATTCCTTCTTCA-GTACCTGCGGA-AGTGAGAAA-TTTCTGTCAGGGAT-T-TATAG 259
| | ||||||||| | ||| || || |||| ||| ||||| ||| ||| | || ||
Sbjct 302 ATGTTTCCTTCTT-ACGTA-CTTAAGATTGTGA-AAAGTTTCTTTCA--GATCTCTAAAG 356
Query 260 CCGTGATCGATAAAGATTTAAGAGACGTGTATCTCAAGGATGCTGAAGATTGTGCTAGTG 319
|||| | |||| |||| | |||||| | |||||||| |||||||||||| ||||||||||
Sbjct 357 CCGTAACCGATGAAGAGTCAAGAGAGGCGTATCTCACGGATGCTGAAGAATGTGCTAGTG 416
Query 320 AAAGAATGAGTCAGGCTCGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGGTGAGGCCA 379
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TAAGAAGGAGTCAGGCTCGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGGTGAGGCCA 476
Query 380 GTACATCTCACAAATGTGAACCTAACTGCGACAA 413
|||||||||| |||||||||||||||||| ||||
Sbjct 477 GTACATCTCAGAAATGTGAACCTAACTGCAACAA 510
> AT1G61097.1 | Symbols: | Expressed protein | chr1:22506919-22507947
REVERSE LENGTH=686
Length=686
Score = 209 bits (113), Expect = 1e-53
Identities = 304/393 (77%), Gaps = 26/393 (7%)
Strand=Plus/Plus
Query 32 TTCACTCATCGATGAGA-CCAGAAACTCTCAAGGTTATTCAGCAACAGCTCACA-GCTAT 89
|||| ||| ||||| | || |||| |||| ||| |||||| || |||||| | |||||
Sbjct 115 TTCAATCAAAGATGA-ATCCTGAAATTCTCGAGGCAATTCAGAAAAAGCTCA-AGGCTAT 172
Query 90 GAAGGCGGTTCAGGA-AACT-AAAGACGACGAAGAAGTaaaaa-aaaTCATGGATGAGTA 146
| |||||| | | | || | || ||| |||| | ||||| || || | ||||||||
Sbjct 173 GGAGGCGGCT-AATAGAATTCCGGGA-GACAAAGATG-AAAAACAATTCGTTGATGAGTA 229
Query 147 CATGTTCTGTTTTAGAAACTGTTACACTGAGGCTGAAATTGTGAATCACATCACCCAGAA 206
|||||||||||| |||||| | ||||||||| ||||| |||| |||||| | | ||
Sbjct 230 CATGTTCTGTTTCAGAAACAGCTACACTGAGAATGAAACTGTGTTTCACATGAAAAATAA 289
Query 207 GATTCCTTCTTCAGTACCTGCGGA-----A-GTGAGAAATTTCTGT-CAGGGATTTATAG 259
| |||| |||| |||||||||||| | |||||||| |||| | | | || |||
Sbjct 290 GTTTCCGTCTTTAGTACCTGCGGATGCGGATGTGAGAAAGTTCTTTAAATTG-TTGATAT 348
Query 260 CCGTGATCGATAAAGATTTAAGAGACGTGTATCTCAAGGATGCTGAAGATTG-TGCTAGT 318
| | || || |||||| | || | | | |||||||||||||||||||| ||| || | |
Sbjct 349 CAGCGACCGGTAAAGAGTCAAAAAAGGCGTATCTCAAGGATGCTGAAGCTTGTTGGT-CT 407
Query 319 -GAAAGAATG-AGTCAGGCTCGTGATACTTCTGAGGAAGCTAAGAGA-AGTCAAGGTGAG 375
| ||| ||| ||||||| ||||| ||||||||||||||||||| | ||||||||||||
Sbjct 408 CG-AAG-ATGTAGTCAGGGGCGTGACACTTCTGAGGAAGCTAAGA-ACAGTCAAGGTGAG 464
Query 376 GCCAGTACATCTCACAAATGTGAACCTAACTGC 408
||||||||||||||||||||||||| |||||||
Sbjct 465 GCCAGTACATCTCACAAATGTGAACGTAACTGC 497
> AT1G61090.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61095.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:22499317-22500331 REVERSE LENGTH=719
Length=719
Score = 132 bits (71), Expect = 3e-30
Identities = 228/300 (76%), Gaps = 26/300 (9%)
Strand=Plus/Plus
Query 42 GATGAGACCAGAAACTCTCAAGGTTATTCAG---CAACAGCTCACAGCTATGAAGGCGGT 98
||||||||||||||||| | || | ||| || || | |||| | ||||||||| |||
Sbjct 148 GATGAGACCAGAAACTCGCGAGATCATTGAGATGCAGCTGCTCCCGGCTATGAAGTTGGT 207
Query 99 TCAGGAAA--CTAAAGACGACGAAGAAGTaaaaa-aaaTCATGGATGAGTACATGTTCTG 155
| |||||| || ||| | |||| || | ||| ||| ||||||||||| ||||||||
Sbjct 208 TAAGGAAAGGCTCGAGAGG--GAAGTAG-AGAAACAAAGCATGGATGAGTTTATGTTCTG 264
Query 156 TTTTAGAAA-CTGTTACACTGAGGCTGAAATTGTGAAT-CACATCACCCAG-AAGATTCC 212
|| |||| ||| ||||||||| |||| || || | ||| | |||| | ||| ||||
Sbjct 265 CTTC-GAAAACTGCTACACTGAGAAGGAAACTGAGA-TGCACGTGACCC-GCAAG-TTCC 320
Query 213 -TTCTTCAGTACC-TGCGGAAGTGAGAAATTT-CTGTCAGG-GATTTATAGCCGTGATCG 268
||||| | || | |||| ||| ||| || || |||| | ||||||| | ||||||
Sbjct 321 CTTCTTTAAAACAAT-CGGATGTGGGAA-TTGGCTTTCAGACG-TTTATAGGCTTGATCG 377
Query 269 ATAAAGATT--T-AAGAGACGTGTATCTCAAGGATGCTGAAGATTGTGCTAGTGAAAGAA 325
||||||| | | |||||| | ||||||||||||||||||||||||||||| || |||||
Sbjct 378 ATAAAGAGTCCTCAAGAGAGGCGTATCTCAAGGATGCTGAAGATTGTGCTAATGTAAGAA 437
Score = 87.9 bits (47), Expect = 7e-17
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 365 GTCAAGGTGAGGCCAGTACATCTCACAAATGTGAACCTAACTGCGACAAA 414
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 450 GTCAAGGTGAGGCCAGTACATCTCACAAATGTGAACCTAACTGCAACAAA 499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19755225357
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5