BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907348
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61090.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 281 6e-75
AT1G61095.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 187 1e-46
AT1G61093.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 156 4e-37
> AT1G61090.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61095.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:22499317-22500331 REVERSE LENGTH=719
Length=719
Score = 281 bits (152), Expect = 6e-75
Identities = 250/295 (85%), Gaps = 15/295 (5%)
Strand=Plus/Plus
Query 1 ATGAGACCAGAAACTCACAAGATTATTATTGA-GAAGCTGCTCCCAGTTATGAAGTTGGT 59
|||||||||||||||| | |||| ||| || | |||||||||| | ||||||||||||
Sbjct 149 ATGAGACCAGAAACTCGCGAGATCATT-GAGATGCAGCTGCTCCCGGCTATGAAGTTGGT 207
Query 60 TAAGGGCAA-CCTCGAGGGGGAAGTAGa-aaaaaaaGGCACGGATGAGTTTGTGTTCTGT 117
||| || || |||||| |||||||||| ||| ||| ||| |||||||||| |||||||
Sbjct 208 TAA-GGAAAGGCTCGAGAGGGAAGTAGAGAAACAAA-GCATGGATGAGTTTATGTTCTGC 265
Query 118 TTCGAAAACTGCTACACTGAGGAGGAAACTGAGAAGCACGTGACCCAG-AAGATTCC-TT 175
||||||||||||||||||||| |||||||||||| ||||||||||| | ||| |||| ||
Sbjct 266 TTCGAAAACTGCTACACTGAGAAGGAAACTGAGATGCACGTGACCC-GCAAG-TTCCCTT 323
Query 176 CTTTAAAAGAATCGGATGTGAGAAATTT-CTATCAGTTGTTTCTAACCATGATCGATAAA 234
|||||||| ||||||||||| ||| || || |||| |||| || | |||||||||||
Sbjct 324 CTTTAAAACAATCGGATGTGGGAA-TTGGCTTTCAGACGTTTATAGGCTTGATCGATAAA 382
Query 235 GA-T--TCAAAAGAGGCGTATCTCAAGGATGCTGAAGATTGTGCTAGTGAAAGAA 286
|| | |||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 383 GAGTCCTCAAGAGAGGCGTATCTCAAGGATGCTGAAGATTGTGCTAATGTAAGAA 437
Score = 261 bits (141), Expect = 8e-69
Identities = 287/351 (82%), Gaps = 35/351 (10%)
Strand=Plus/Plus
Query 384 TTT-CTTACAAT-CTTCGTTTCATTCCCCTCTTACCCATTCATTTCTGTCTGTTTTTCTT 441
||| |||||||| ||| |||| || ||||| || || | |||||| ||| ||||||
Sbjct 86 TTTACTTACAATCCTT-GTTTTGTT---CTCTTTCCTATACTTTTCTG--TGTATTTCTT 139
Query 442 CA-ATCAAAGATGAGACCAGAAACTCGCGAGGTTATTGAGATGCAGCTGCTCCCGGCTAT 500
| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 140 -AGATCAAAGATGAGACCAGAAACTCGCGAGATCATTGAGATGCAGCTGCTCCCGGCTAT 198
Query 501 GAA---GG---AGGCTACGG-TC-A-A--G--CTAGAAAAACAAAGCATTGATGAGTTTA 547
||| || ||| | || || | | | |||| ||||||||||| ||||||||||
Sbjct 199 GAAGTTGGTTAAGG-AAAGGCTCGAGAGGGAAGTAGAGAAACAAAGCATGGATGAGTTTA 257
Query 548 TGTTCTGTTTCAAAAACTGCTACGA-TGAGAAGGAAACTGAGATGCACGTGACCCAG-AA 605
||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||| | ||
Sbjct 258 TGTTCTGCTTCGAAAACTGCTAC-ACTGAGAAGGAAACTGAGATGCACGTGACCC-GCAA 315
Query 606 GATTCC-TTCTTTTAAAGAATCGGATGTGAGAAATTT-CTATCAGTTGATTCTAACCATG 663
| |||| |||||| ||| ||||||||||| ||| || || |||| | || || | ||
Sbjct 316 G-TTCCCTTCTTTAAAACAATCGGATGTGGGAA-TTGGCTTTCAGACGTTTATAGGCTTG 373
Query 664 ATCGATAAAGAG-CC--AAGAGAGGCGTATCTCAAGGATGCTAAAGATTGT 711
|||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 374 ATCGATAAAGAGTCCTCAAGAGAGGCGTATCTCAAGGATGCTGAAGATTGT 424
> AT1G61095.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61093.1);
Has 17 Blast hits to 13 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22504514-22505511
REVERSE LENGTH=700
Length=700
Score = 187 bits (101), Expect = 1e-46
Identities = 228/287 (79%), Gaps = 18/287 (6%)
Strand=Plus/Plus
Query 541 GAGTTTATGTTCTGTTTCAAAAACTGCTACG-ATGAGAAGGAAACTGAGA-TGCACGT-G 597
||||| |||||||||||| ||||||| ||| | ||||| ||||||| || | || | |
Sbjct 235 GAGTTCATGTTCTGTTTCGAAAACTGTTACACA-GAGAATGAAACTGTGAAT-CATATAG 292
Query 598 ACCCAGAAGATTCCTTCTTT--TAAAGAATCGGATGTGAGAAATTTCTATCAGTTGATTC 655
| ||||| ||||||||| || || | ||| |||| ||||| |||| | | |
Sbjct 293 TTC-AGAAGTTTCCTTCTTACGTACCCAAGAG--TGTAAGAAGTTTCTTTCAGAAG-TCC 348
Query 656 -TAACCATGATCGATAAAGAGCCAAGAGAGGCGTATCTCAAGGATGCTAAAGATTGTTC- 713
|| || |||||||| ||||| |||||||||||||||| | ||||||| |||| ||| |
Sbjct 349 ATAGCCTTGATCGATGAAGAGTCAAGAGAGGCGTATCTTACGGATGCTGAAGAATGTGCT 408
Query 714 -GTTTCATAGAAGGAATCTGA-TGCGTGATAATTCTGAGAAAGCTAAGAGCAGTCAAGGT 771
|| | | ||||||| || | | ||||||| ||||||| |||||||||| |||||||||
Sbjct 409 AGTGT-A-AGAAGGAGTCAGGCT-CGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGGT 465
Query 772 GAGGCCAGCACATCTCACAAATGCGAACCTAACTGCAACAAACATTA 818
|||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 466 GAGGCCAGTACATCTCACAAATGTGAACCTAACTGCAACAAACATTA 512
> AT1G61093.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G61095.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr1:22501885-22502941 REVERSE LENGTH=731
Length=731
Score = 156 bits (84), Expect = 4e-37
Identities = 133/156 (85%), Gaps = 6/156 (4%)
Strand=Plus/Plus
Query 666 CGATAAAGAGCCAAGAGAGGCGTATCTCAAGGATGCTAAAGATTGTTC--GTTTCATAGA 723
|||| ||||| |||||||||||||||||| ||||||| |||| ||| | || | | |||
Sbjct 364 CGATGAAGAGTCAAGAGAGGCGTATCTCACGGATGCTGAAGAATGTGCTAGTGT-A-AGA 421
Query 724 AGGAATCTGA-TGCGTGATAATTCTGAGAAAGCTAAGAGCAGTCAAGGTGAGGCCAGCAC 782
|||| || | | ||||||| ||||||| |||||||||| ||||||||||||||||| ||
Sbjct 422 AGGAGTCAGGCT-CGTGATACTTCTGAGGAAGCTAAGAGAAGTCAAGGTGAGGCCAGTAC 480
Query 783 ATCTCACAAATGCGAACCTAACTGCAACAAACATTA 818
|||||| ||||| ||||||||||||||||| |||||
Sbjct 481 ATCTCAGAAATGTGAACCTAACTGCAACAAGCATTA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5