BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907360

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60987.1 | Symbols: SCRL5 | SCR-like 5 | chr1:22460377-22461...   344    3e-94
  AT2G25687.1 | Symbols:  | Encodes a defensin-like (DEFL) family...   267    6e-71


> AT1G60987.1 | Symbols: SCRL5 | SCR-like 5 | chr1:22460377-22461164 
FORWARD LENGTH=688
Length=688

 Score =  344 bits (186),  Expect = 3e-94
 Identities = 260/296 (88%), Gaps = 4/296 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGTTTGTTGCAATCTTCTTAGTTACTTGTGTCTTCTTCTCCCTTTTCCCAAGCCAC  60
            ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct  63   ATGAAGTTTGTTGCAATCTTCTTGGTTACTTGTGTCTTATTCTCCCTTTTCCCAAGCCAC  122

Query  61   CTTTCACAAGGTGAAGAATCAAGCATAAACATTGCTGCGCAGAAAAGGTCATGGTGTCCG  120
            || |||||||||||||||||||| || || |||  |||| ||| |||| |||||||||||
Sbjct  123  CTGTCACAAGGTGAAGAATCAAGGATGAATATTAATGCGGAGAGAAGGCCATGGTGTCCG  182

Query  121  GATAAAAGACAAGTGTTTGATGGTATTTGTGAAAAGGATGGAGCAAAACAATGTCTAGAT  180
              ||||| |||| ||||||||  || |||||||  |||||||||||||||||||||||||
Sbjct  183  TCTAAAATACAAATGTTTGATACTAATTGTGAAGTGGATGGAGCAAAACAATGTCTAGAT  242

Query  181  CTCTTATTAAGTTCTTGGGATCCAAGTGTAAGACTCAGCCC-AGTCTCCTGCACTTGCTC  239
            |||||| ||||| ||||||||||||||||||| |||| ||| |||||| |||| ||||||
Sbjct  243  CTCTTAATAAGTACTTGGGATCCAAGTGTAAGGCTCA-CCCGAGTCTCTTGCATTTGCTC  301

Query  240  TGATTTTCCTTACTAC-AATATTCTTTGTAGTTGTCTTAATATGAAATGTCCCTAG  294
            ||||||||||||| |  |||||  | |||||||||| ||||||||  |||||||||
Sbjct  302  TGATTTTCCTTAC-AGGAATATGATGTGTAGTTGTCCTAATATGATTTGTCCCTAG  356


> AT2G25687.1 | Symbols:  | Encodes a defensin-like (DEFL) family 
protein. | chr2:10939037-10939418 FORWARD LENGTH=281
Length=281

 Score =  267 bits (144),  Expect = 6e-71
 Identities = 234/277 (84%), Gaps = 8/277 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGTTTGTTGCAATCTTCTTAGTTACTTGTGTCTTCTTCTCCCTTTTCCCAAGCCAC  60
            ||| |||||| |||||| ||||| |||||||||||||| ||||||||| |||||||||||
Sbjct  2    ATG-AGTTTGCTGCAATATTCTTGGTTACTTGTGTCTTATTCTCCCTTCTCCCAAGCCAC  60

Query  61   CTTTCACAAGGTGAAGAATCAAGCATAAACATTGCTGCGCAGAAAAGGTCATGGTGTCCG  120
            |||||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||| 
Sbjct  61   CTTTCACAAGGTGAAGAATCAAGCATGAACATTGCTGCACAGAGAAGGCCATGGTGTCCA  120

Query  121  GATAAAAGACAAGTGTTT-GATGGTATT-TGTGAAAAGGATGGAGCAAAACAATGTCTAG  178
              ||||| |||||||||  | |||| |  |||| || | |||||||| ||||||||||| 
Sbjct  121  TCTAAAAAACAAGTGTTCAG-TGGT-TCGTGTGGAATG-ATGGAGCACAACAATGTCTAA  177

Query  179  ATCTCTTATTAAGTTCTTGGGATCCAAGTGTAAGACTCAGCCCAGTCTCCTGCACTTGCT  238
            ||  |||||| ||| | ||||||||||||||||| || |||||| ||||||||| |||| 
Sbjct  178  ATAACTTATTCAGTACATGGGATCCAAGTGTAAGGCTGAGCCCAATCTCCTGCAATTGCA  237

Query  239  CTGATTTTCCTTA-CTACAATATTCTTTGTAGTTGTC  274
            ||  |   | ||| |||| ||||||||||||||||||
Sbjct  238  CTCCTCAAC-TTAACTACCATATTCTTTGTAGTTGTC  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5