BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907367
Length=3519
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicas... 5288 0.0
AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase ... 2250 0.0
> AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase
L4B | chr1:22430847-22438877 REVERSE LENGTH=3877
Length=3877
Score = 5288 bits (2863), Expect = 0.0
Identities = 3233/3407 (95%), Gaps = 44/3407 (1%)
Strand=Plus/Plus
Query 126 TGGGAGTCATCTCCCTGAAGTCAATAAATCCAGAGGTCACTTTCTTCAAACAAATTGGTC 185
|||||||||||||| |||||| ||||| |||||| ||||||||| ||||||||||||||
Sbjct 256 TGGGAGTCATCTCCATGAAGTTAATAATTCCAGAAGTCACTTTCCTCAAACAAATTGGTT 315
Query 186 GAAACATGCCAAGGCTTTTGAGTGTATACCATCCTTGAATAAGTTTATGGGCTCCAATTT 245
|||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 316 GAAAGTTGCCAAGGCGTTTGAGTGTATACCATCCTTAAATAAGTTTATGGGCTCCAATTT 375
Query 246 CCTTTACTCTCTAGAAAGTCAAAAGCTGGCAAGAGATAGAGAAATGGGTGCAAGGTCTAT 305
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 376 CCTTTACTCTCTAGAAAGTCAAAAGCTGGGAAGAGATAGAGAAATGGCTGCAAGGTCAAT 435
Query 306 TGAAAACATCGCTCCTGTAACTGTGCAAACTTTGGCACGACCAGAAATTGAAAAGGCGTG 365
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||
Sbjct 436 TGAAAACATCGCTCCTGTAACTGTACAAACTTTGGCACGACCACAAATTGAGAAGGCTTG 495
Query 366 GTGTACTCTTATAAATCTCTCAATAAATAATACTTACCTGAGACCTGGCATTACTCCTGC 425
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 496 GTGTACTCTTATAAATCTATCAATAAATAATACCTACCTGAGACCTGGCATTACTCCTGC 555
Query 426 AATTGATGATGGCAGCACTGA-TCGTTCATCATCTACGAAAAGATCCACTGTTAAAGTTA 484
||||||| ||| ||||||| | |||| |||| ||||||||| |||||||| |||||||||
Sbjct 556 AATTGATAATGACAGCACT-AGTCGTACATCTTCTACGAAAGGATCCACTTTTAAAGTTA 614
Query 485 CATCCAGTGCTGATGGATCTTTCTACGCACACAATCATCCAGAGCATAGTCAAAGGAGTT 544
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 615 CATCCAATGCTGATGGATCTTTCTGCGCACACAATCATCCAGAGCATAGTCAAAGGAGTG 674
Query 545 TAAGAGGCACTGCAAAATCATTTGACAGTTTCTCATCCTCTTCCGTAGGTGATAATAACA 604
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 675 TAAGAGGCACTGCAAAATCAATTGACAGTTTCTCCTCCTCTTCCGTAGGTGATAATAAAA 734
Query 605 TAACTATTGGCAAGGTTCCACGGGTCAA-TGATGAGGTTAGAGATTCAGTAACGGGTTGT 663
||| ||||| |||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 735 TAATTATTGACAAGGTTCCACGGGTCAACT-ATGAGGTTAGAGATTCAGTAAC----TG- 788
Query 664 AAATATACAAATGGTATGGAGATGCCACCAATCAAAAATTCCGCACACCTAGTCAGACTG 723
| |||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
Sbjct 789 ---T-TACAAATGGTATGGAGATGCCACCAATCAAAAATTCTGCACAACTAGCCAGACCG 844
Query 724 GTGGAGCCTAGGGAAGCTAGTCTTGGTGAGATTGATTATGATGACATAATGGAGATTATT 783
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GTGGAGCCTAGGGAAGTTAGTCTTGGTGAGATTGATTATGATGACATAATGGAGATTATT 904
Query 784 GAGGTAGATCAGATTGTGATGGACCACTGCCCTTCAAGGTGTCCCAAGCAACCATCAGTA 843
|| ||||| ||||||| |||||| ||||||||||||| |||| | |||||||||||||||
Sbjct 905 GACGTAGACCAGATTGCGATGGAACACTGCCCTTCAACGTGTACGAAGCAACCATCAGTA 964
Query 844 TCTAAGTTTGTGGATACATTTGCTTCCAGAAGAGAAGAAGAGCAAGGTTTGTTTCCTGAA 903
|||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 965 TCTAAGTTTGTGGATATATTTACTTCCAGAAGAGAAGAAGAGCAAGGTTTGCCTCCTGAA 1024
Query 904 TTATGTTCCAACTGTAGTCATGGAATAAAGCTAGGGCTTTGTCCTGAAGCTTCTACCCAT 963
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 ATATGTTCCAACTGTAGTCATGGAATAAAGCTAGGGCTTTGTCCTGAAGCTTCTACCCAT 1084
Query 964 GTGGAACAAATGAAGGATACGCTGCTTGCAATATCAAATGAATTCCTCGACAATACTTAT 1023
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1085 GTGGAACAAATGAAGGATACGCTGCTTGCAATATCAAATGAAATCCTCGACAATACTTAT 1144
Query 1024 GACCTGGGCCCCGATCATGTTGAACAGCTTCGTCAAAAGAGGTTACTGTTGAAAAAGCAA 1083
||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1145 GACCTGGGCCCTGATCATGTTGAACAGCTTCATCAAAAGAGATTACTGTTGAAAAAGCAA 1204
Query 1084 ATCCAGCAGCTCGAGATCCTTATCCAAAATAAAGAAAGGAAAAAATCTGAGTGTTTGGTA 1143
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1205 ATCCAGCAGCTCGAGATCCTTATCCATAATAAAGAAAGGAAAAAATCTCAGTGTTTGGTA 1264
Query 1144 TCTACACCTTCTCATAATATTCAGTATGAAACACCTCAAACAACAAATCATGTGGTGGTT 1203
|||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1265 TCTATACCTTCTCATAATACTCAGTATGAAACACCTCAAACAACAAATCTTGAGGTGGTT 1324
Query 1204 TATACGCAGACAGATTCTCCTGACAAATCATGTGGTGGTTTATGCCCAGCAACGGAAGGC 1263
||| ||||||||||||| | ||| ||| | | || || | | |||||
Sbjct 1325 TATGGGCAGACAGATTCT-C---CAACTCA-----T-G--TA---AAAG--A-GCAAGGC 1366
Query 1264 AGATATGTAACTGATAACTGGAATATGCCAAGAGACTATTTAGTTTCTAAAGAGAGGTAT 1323
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AGATGTGTAACTGATAACTGGAATATGCCAAGAGACTATTTAGTTTCTAAAGAGAGGTAT 1426
Query 1324 GATATTTCATCTGGTTCTGTAGAGAGGGAACAATCTGTTTCCGAGGTTATAGATGTCACT 1383
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1427 GATATTTCATCTGGTTCTGAAGAGAGGGAACAATCTGTTTCCGAGGTTATAGATGTCACT 1486
Query 1384 GATACCGAGAGTTCAAATGACAAAAAGTGGGCCAGTCGTGATTTTCCTTGGACGAAAAAT 1443
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1487 GATACCGAGAGTTCAAATGACAAAAAGTGGACCAGTAGTGATTTTCCTTGGACGAAAAAT 1546
Query 1444 CTGGAGGTCTATAACAAAATAGTGTTTGGAAACCACTCATTTCGACCAAACCAAAGAGAG 1503
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1547 CTGGAGGTCTATAACAAATTAGTGTTTGGAAACCACTCATTTCGACCCAACCAAAGAGAG 1606
Query 1504 ATCATTAATGCTACAATGAGTGGTTGTGATGTTTTTGTTTTGATGCCAACCGGAGGGGGG 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 ATCATTAATGCTACAATGAGTGGTTGTGATGTTTTTGTTTTGATGCCAACCGGAGGGGGG 1666
Query 1564 AAAAGCTTGACATATCAGCTCCCTGCTCTACTCTGTGCAGGAATAACATTAGTCATTTCT 1623
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 AAAAGCTTAACATATCAGCTCCCTGCTCTACTCTGTGCAGGAATAACATTAGTCATTTCT 1726
Query 1624 CCACTTGTTTCACTCATTCAAGACCAGATAATGAACTTATTGCAGACCAATATAGCTGCT 1683
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1727 CCACTTGTTTCACTCATTCAAGACCAGATAATGAACTTATTGCAGACCAATATATCTGCT 1786
Query 1684 GCTTCCTTAAGTGCCGGAATGGAGTGGGCTGAACAGCTAGAGATACTTCAGGAGCTGAGC 1743
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1787 GCTTCCTTAAGTGCCGGAATGGAATGGGCTGAACAACTAGAGATACTTCAGGAGCTGAGC 1846
Query 1744 TCTGAGAATTCTAAATACAAGTTACTGTATGTAACACCAGAAAAAGTGGCAAAAAGTGAA 1803
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 TCTGAGAAGTCTAAATACAAGTTACTGTATGTAACACCAGAAAAAGTGGCAAAAAGTGAA 1906
Query 1804 TCCCTTATAAGGCACCTCGAAATCTTAAACTCCCGTAGTTTGCTTGCTCGATTTGTTATT 1863
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TCCCTTTTAAGGCACCTCGAAATCTTAAACTCCCGTAGTTTGCTTGCTCGATTTGTTATT 1966
Query 1864 GATGAAGCTCATTGTGTGAGTCAGTGGGGGCATGACTTTCGACCAGACTACCAGGGTCTT 1923
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1967 GATGAAGCTCATTGTGTGAGTCAGTGGGGGCATGACTTTCGACCTGACTACCAGGGTCTT 2026
Query 1924 GGTGTTCTGAAGCAGAAGTTTCCTAACATTCCCATGTTAGCTTTGACAGCTACTGCAACA 1983
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2027 GGTGTTCTGAAGCAGAAGTTTCCAAACATTCCCATGTTAGCTTTGACAGCTACTGCAACA 2086
Query 1984 ACCAGCGT-AAAGGAAGATGTTGTACAAGCTCTTGGGCTGGTAAACTGTGTTGTTTTCCG 2042
|||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2087 ACCAGCGTGAAA-GAAGATGTTGTACAAGCTCTCGGGCTGGTAAACTGTGTTGTTTTCCG 2145
Query 2043 GCAAAGTTTTAATCGCCCTAATCTATGGTATTCTGTTGTTCCCAAGACGAATAAGTGTCT 2102
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2146 GCAAAGTTTTAATCGCCCTAATCTATGGTATTCTGTTGTTCCCAAGACAAATAAGTGTTT 2205
Query 2103 GGAAGATATTGACAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTG 2162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2206 GGAAGATATTGACAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTG 2265
Query 2163 TCTTTCAAGAATGGACTGCGAAAAAGTCACGGAAATGTTGCGGGCGTTTGGCCATAAAGC 2222
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 2266 TCTTTCAAGAATGGACTGCGAAAAAGTCACGGAAGCATTGCGGGTGTTTGGCCATAAAGC 2325
Query 2223 GGCCTTCTACCATGGCAGTATGGATCCTGGTAAACGTGCCTTTGTACAGAAACAATGGAG 2282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2326 GGCCTTCTACCATGGCAGTATGGATCCTGGTAAACGTGCCTTTGTACAGAAACAATGGAG 2385
Query 2283 CAAGGATGAAATCAATATAATATGTGCTACAGTGGCATTTGGAATGGGAATCAATAAGCC 2342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2386 CAAGGATGAAATCAATATAATATGTGCTACAGTGGCATTTGGAATGGGAATCAATAAGCC 2445
Query 2343 TGATGTTCGTTTTGTAATTCATCATTCTCTACCAAAGTCCATAGAAGGCTATCATCAGGA 2402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2446 TGATGTTCGTTTTGTAATTCATCATTCTCTACCAAAGTCCATAGAAGGCTATCATCAGGA 2505
Query 2403 ATGTGGTCGTGCTGGTAGAGACGGCCAGAGGTCATCATGTGTTTTGTATTACAGTTACAC 2462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2506 ATGTGGTCGTGCTGGTAGAGACGGCCAGAGGTCATCATGTGTTTTGTATTACAGTTACAC 2565
Query 2463 TGATTATATTCGAGTGAAGCATATGATTAGCCAAGGAGGACTTGGCCAAGGCCAGATGAA 2522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2566 TGATTATATTCGAGTGAAGCATATGATTAGCCAAGGAGGACTTGGCCAAGGCCAGATGAA 2625
Query 2523 AATGGGATATAATTGTAAAGCAAGTTCAGGGAGGATGCTCGAAACGAACACGGAAAACCT 2582
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2626 AATGGGATATAATTGCAAAGCAAGTTCAGGGAGGATGCTCGAAACGAACACGGAAAACCT 2685
Query 2583 TCTCCGCATGGTTAGTTACTGTGAAAATGAGGTGGACTGTCGACGTTTCCTACAGCTAGT 2642
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2686 TCTCCGCATGGTTAGTTACTGTGAAAATGAGGTGGATTGTCGACGTTTCTTACAGCTAGT 2745
Query 2643 TCATTTGGGAGAAAAATTTGATTCAACAAACTGCaaaaaaaCATGTGATAATTGTTCCAG 2702
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2746 TCATTTGGGAGAAAAATTTGATTCGACAAACTGCAAAAACACATGTGATAATTGTTCCAG 2805
Query 2703 CAGCAAAAGTTTGATTGACAAAGATGTAACTGTGATTGCAAGGCAACTGGTGGAACTGGT 2762
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2806 CAGCAAAATTTTGATTGACAAAGATGTAACTGTGATTGCAAGGCAACTGGTGGCACTGGT 2865
Query 2763 TAAGCTAACAGGAGAAAGGTTTTCGTCAGCTCATATTGTAGAAATCTACAGGGGATCCTT 2822
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2866 TAAGCTAACAGGAGAAAGATTTTCGTCAGCTCATATTGTAGAAATCTACAGGGGATCCTT 2925
Query 2823 AAACCAGTCGGTCAAGAGAAACAGACAAGAGACTTTGCACCTCCACGGAGCAGGAAAGCA 2882
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2926 AAACCAGTCGGTCAAGAGAAACAGACAAGACACTTTGCACCTCCACGGAGCAGGAAAGCA 2985
Query 2883 TTTAGCTAAAAGTGAAGCCTCTCGTATTTTGCACTATCTTGTGACAGAGGATATTCTCGC 2942
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2986 TTTAACTAAAAGTGAAGCCTCTCGTATTTTGCACTACCTTGTGACAGAGGATATTCTCGC 3045
Query 2943 AGAGGGTGTTAGAAAAAGTGATCTGTATGGATCTGTATCGTCGTTGCTGAAGGTGAATAG 3002
||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 3046 AGAGGGTGTTAAAAAAAGTGAACTGTATGGATCTGTATCGTCATTGCTGAAGGTGAACAG 3105
Query 3003 ATCAAAGGCCGCCTCGCTCTTATCTGGAGGCCAGAGTATAACGATGAGGTTTCCTTCGAC 3062
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 3106 ATCAAAGGCCGCCTCGCTCTTATCTGGAGGCCAGAGTATAACAATGAGATTTCCTTCGAC 3165
Query 3063 CATAAAAGCGTCAAAGCCGAGCAAATCCACAGCAAA---AG------TTCCACTAAAGCA 3113
|||||||| |||||||| |||||||||||||||||| || ||||||| |||||
Sbjct 3166 CATAAAAGTGTCAAAGCAGAGCAAATCCACAGCAAATCCAGCAAAAGTTCCACTTAAGCA 3225
Query 3114 AACTACTCTTCCAATGGCAAAAGCTGCCCCACAAGATTCGAATCTCCCCCACATTTTGTT 3173
|||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 3226 AACTACCCTTCCAATGGCAAAAGCTGCCCCACAAGATTCGAATCTCTCCGGCATTTTGTT 3285
Query 3174 GACAGCCTTGAAAAAGCTTCGTTCTGATATTGTCAAAGAATC-CTCAGATGGAGTCATGG 3232
||||||||||||||| ||||| ||||||||||||||||||| | ||||| ||||||||
Sbjct 3286 GACAGCCTTGAAAAATCTTCGGACTGATATTGTCAAAGAATCGC-CAGATTTAGTCATGG 3344
Query 3233 CATATCATATATTCGGCAATGCGACGCTTGAACAGATAAGTAAACGACTTCCCAGAACCA 3292
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 3345 CATATCATATATTCGGCAATGCGACGCTTAAAGAGATAAGTAAACGACTTCCCAGAACCA 3404
Query 3293 AAGAGGAACTCCTTGATATCAATGGTCTAGGAAAAGCCAAGGTGAGCAAATACGGAGATC 3352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 AAGAGGAACTCCTTGATATCAATGGTCTAGGAAAAGCCAAGGTGAGCAAATACGGAGATC 3464
Query 3353 GGTTATTGGAAACCATATATTCAACCATCAACGACCACTACAAAACCGGTCCCGGTTCAG 3412
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3465 GGTTATTGGAAACCATAGATTCAACCATCAACGACCACTACAAAACCCGTCCCGGTTCAG 3524
Query 3413 GGAAGAGGAGAAGAGACGAGAACATTTGCCCGAATGTAGCAGACGATGATGATCCCGACT 3472
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
Sbjct 3525 GGAAGAGGAGAAGAGACGAGAACGTTAATCCGAATGTAGCAGAAGATGATGATCCCGATT 3584
Query 3473 GGACTGCGAGTCAGTCCCACAAAAAGGCAGTGAAGAACAAAAAGTAA 3519
||| |||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 3585 GGAGTGCGAGTCAGTCTCACAAAAAGGTAGTGAAGAACAAAAAATAA 3631
> AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase
(RECQl4A) | chr1:3647894-3655590 REVERSE LENGTH=3916
Length=3916
Score = 2250 bits (1218), Expect = 0.0
Identities = 2666/3341 (80%), Gaps = 195/3341 (6%)
Strand=Plus/Plus
Query 128 GGAGTCATCTCCCTGAAG-TCAATAAATCC-AGAGGTCACTTTCTTCAAACAAATTGGTC 185
||||||| ||||| |||| || | ||| || |||||| | | |||||| ||||||||
Sbjct 237 GGAGTCACCTCCCCGAAGTTC-AGAAA-CCTAGAGGT--C---C-TCAAACGAATTGGTC 288
Query 186 GA-AACATGCCAAGGCTTTTGAGTGTAT-ACCATCCTTGAATAAGTTTATGGGCTCCAAT 243
| ||||||| ||||| | ||| || | | |||| ||| ||||||| || ||||||||
Sbjct 289 -AGAACATGCAAAGGCGCTCGAGAGT-TCATCATCGGTGACTAAGTTTCTGAGCTCCAAT 346
Query 244 TTCCTTTACTCTCTAGAAAGTCAAAAGCTGGCAAGAGATAGAGAAATGGGTGCAAGGTCT 303
|||||||| | |||||||| ||||||| | |||||| |||| |||||||||
Sbjct 347 GTCCTTTACGCCCTAGAAAGCCAAAAGC---C------TAGAGATATGGCTGCAAGGTCA 397
Query 304 ATTGAAAACATCGCTCC--TGT-AACTGTGCAAACTTTGGCACGACCAG-AAATTGAAAA 359
|||| | | | || ||| || |||||| |||||||| | ||| | ||||| |||
Sbjct 398 ATTG----CGTTTC-CCAGTGTGAA-TGTGCATACTTTGGCGC-ACCCGCAAATTTCAAA 450
Query 360 GGCGTGGTGTACTCTTAT-AAATCTCTCAATAAATAATACTTACCTGAGACCTGGCATTA 418
||| ||| || ||||| | || ||| ||| |||||||||| ||||| ||||||||| |||
Sbjct 451 GGCTTGGCGTGCTCTT-TCAAGTCTTTCAGTAAATAATACCTACCTAAGACCTGGCGTTA 509
Query 419 CTCCTGCAATTGATGATGGCAGCACTGA-TCGTTCA-TCAT-CTACGA-AAAGATCCACT 474
|||| | ||||||| ||||| || ||| || || | || | | | || | ||||| ||
Sbjct 510 CTCCCCCCATTGATGTTGGCACCAATGACTC-TT-ATTC-TGC-AAGAGAGAGATCTACC 565
Query 475 GTTAAAGTTACATCCAGTGCTGATGGATC--TTTCTACGCACACAATC-ATCCAGAGCAT 531
| ||||||| ||| || ||| ||| || ||| | || | || || | ||| | | |
Sbjct 566 GCAAAAGTTATATCTAGCACTGGTGGTTCTGTTTATTCG-A-GCACTCGA-CCA-AACCT 621
Query 532 -AGT-CAAAGGA-GTTTAAGAGGCACTGCAAAATCATTTGACAGTTTCTCATCCTCT-TC 587
||| ||| | | |||| ||| |||| || ||| ||| | |||||| | |||||| ||
Sbjct 622 AAGTGCAATGAATGTTT--CAGGAACTGGAAGATCCTTTCATAGTTTCCCTTCCTCTGTC 679
Query 588 CGTAGGTGATAATAACATAACTATTGGCAAGGTTCCACGGGTCAATGATGAGGTTAGAGA 647
| | |||||| |||| ||| | || ||| ||||||||| || ||||| | |||||
Sbjct 680 CCT-GGTGATGATAAAATAGTTGCTGAAAAGTTTCCACGGGGAAACAATGAGATCAGAGA 738
Query 648 TTCAGTAA-CGGGTTGTAAATATACAAATGGTATGGAGATGCCACCAATCAAAAATTCCG 706
|||| || | |||| | || ||||||| |||||| | || || ||||| |
Sbjct 739 ATCAG-AACCCAGTTGCACGCATTTAAATGGTGTGGAGAAG---TCATTCGGGAATTCTG 794
Query 707 CACACCTAGTCAGA-CTGGTGGAGCCTAGGGAAGCTA-GTCTTGGTGAGATTGATTATGA 764
|| || || | || | | | || |||| |||| | |||||| ||| || ||| ||||
Sbjct 795 CATTCCCAG-CTGAGCAGTTCGAATCTAGAAAAGC-ATGTCTTGATGATATGGATGATGA 852
Query 765 TGACATAATGGAGATTATTGAGGTAGATCAGATTGTGATGGACCACTGCCCTTCAAGGTG 824
||||||| | |||| |||||| || || || || |||||||| |||| || ||||| |
Sbjct 853 TGACATACTTGAGAATATTGACGTCGACCAAATAGTGATGGAACACTACCATTCAACAAG 912
Query 825 T-CCCAAGCAACCATCAGTATCTAA-GTTT-G-TG-G-A-T--A-C-----AT----TTG 865
| ||| | || |||||||| ||||| ||| | || | | | | | || ||
Sbjct 913 TACCCCA-CAGCCATCAGTGTCTAATTTTTCGTTGAGAACTCCACCTGTAGATAGAAGTG 971
Query 866 CTTCCAGAAGAGAAGAAGA--GCAAGGTTTGTTTCCTGAATTATGTTCCAACTGTAGTCA 923
|||||||| ||||||||| |||| | || |||||||||||||||||||||||||||
Sbjct 972 CTTCCAGATTAGAAGAAGAGTGCAA--TCTGCCTCCTGAATTATGTTCCAACTGTAGTCA 1029
Query 924 TGGAATAAAGCTAGGGCTTTGTCCTGAAGCTTCTACCCATGTGGAACAAATGAAGGATAC 983
|||||||||| | ||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 1030 TGGAATAAAGTTGGGGCTTTGTCCAGAAGCTTCAACCCATGTGGAGCAGATGAAGGACGT 1089
Query 984 GCTGCTTGCAATATCAAATGAATTCCTCGACAATACTTA-TGACCTGGGCCCCGATCATG 1042
| |||||||||||||||||||| |||| ||| || | || ||||||| | || |||| ||
Sbjct 1090 GTTGCTTGCAATATCAAATGAACTCCTTGACGATGC-TACTGACCTGAGTCCTGATCGTG 1148
Query 1043 TTGAACAGCTTCGTCAAAAGAGGTTACTGTTGAA-AAAGCAAATCCAGCAGCTCGAGATC 1101
||| |||||| |||||| ||||||||| | |||| ||| ||||| ||||||||||||| |
Sbjct 1149 TTGGACAGCTCCGTCAAGAGAGGTTACGGCTGAAGAAA-CAAATTCAGCAGCTCGAGAAC 1207
Query 1102 CTTATCCAAAATAAAGAAAGGAAAAAATCTGAGTGTTTGGT-ATCTACACCTTCTCATAA 1160
| ||||| | |||||||||| |||||||| ||| ||| || ||| ||| || ||| | |
Sbjct 1208 CATATCCGAGATAAAGAAAGCCAAAAATCTCAGT-TTTTGTCATCGACAGCTACTCGT-A 1265
Query 1161 TATT-CAGTATGAAACACCTCAAA-CAACAAATCATGTGGTGGTTTATA-CGCAGACAGA 1217
| || ||||||||||||||| ||| |||||||| || ||| | | | | || || ||
Sbjct 1266 TTTTCCAGTATGAAACACCT-AAATCAACAAATTATAAAATGGATCA-ACCACAAACTGA 1323
Query 1218 TTCTCCTGACAAATCATGTGGTGGTTTATGCCCAGCAACGGAAGGCAGATATGTAACTGA 1277
|| | | || | ||||| | || | | | |||||||||||| |||
Sbjct 1324 TT-TTC-GA-GCA-CATGT--AAG----TG---A-C--C--AAGGCAGATATGCCTGTGA 1365
Query 1278 TAACTGGAATATGCCAAGAGACTATTTAGTTTCTAAAGAGAGGTATGATATTTCATCTGG 1337
|| |||||| | ||||||||| | || ||||| ||| || |||| | |||||||||
Sbjct 1366 TAGCTGGAACACGCCAAGAGATTCTTCCTTTTCTGTAGATAGATATGGTCTTTCATCTGC 1425
Query 1338 TTCTGTAGAGAGGGAACAATCTGTTTCC-GAGGTTATAGATGTCA-CTGATACCG-AGAG 1394
| |||||||||||||||||| || |||| || |||| || || | || | || | || |
Sbjct 1426 TCCTGTAGAGAGGGAACAATATG-TTCCAAAGATTATTGACGTAACCT-ACACTGAAG-G 1482
Query 1395 TTCAAATGACAAAAAGTGG-GCCAGTCGTGATTTTCCTTGGACGAA--AAATCTGGAGGT 1451
|||||| |||||||| ||| | ||||||||| ||||| ||||| || |||| |||||||
Sbjct 1483 TTCAAACGACAAAAAATGGAG-CAGTCGTGAATTTCCCTGGAC-AAGGAAAT-TGGAGGT 1539
Query 1452 CT-ATAACAAAATAGTGTTTGGAAACCACTCATTTCGACCAAACCAAAGAGAGATCATTA 1510
| ||||||||| |||||||||||| || || |||||||| ||||| ||||| || || |
Sbjct 1540 -TAATAACAAAAAAGTGTTTGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCA 1598
Query 1511 ATGCTACAATGAGTGGTTGTGATGTTTTTGTTTTGATGCCAACCGGAGGGGGGAAAAGCT 1570
|||| ||||||||||| | |||||||||||||||||||||||| ||||| ||||| || |
Sbjct 1599 ATGCAACAATGAGTGGCTCTGATGTTTTTGTTTTGATGCCAACTGGAGGAGGGAAGAGTT 1658
Query 1571 TGACATATCAGCTCCCTGCTCT-ACTCTGTGCAGGAATAACATTAGTCATTTCTCCACTT 1629
|||||||||||||||| ||||| | |||||| ||||||||||||||| ||||||||||||
Sbjct 1659 TGACATATCAGCTCCCCGCTCTGA-TCTGTGGAGGAATAACATTAGTAATTTCTCCACTT 1717
Query 1630 GTTTCACTCATTCAAGACCAGATAATGAACTTATTGCAGACCAATATAGCTGCTGCTTCC 1689
|| || || ||||||||||||||||||||| |||||||| |||||||| | |||||||||
Sbjct 1718 GTGTCTCTTATTCAAGACCAGATAATGAACCTATTGCAGGCCAATATACCAGCTGCTTCC 1777
Query 1690 TTAAGTGCCGGAATGGAGTGGGCTGAACAGCTAGAGATAC-TTCAGGAGCTGAGCTCTGA 1748
|||||||||| ||||| ||||||||||| ||| |||| | |||||||||||| || ||
Sbjct 1778 CTAAGTGCCGGGATGGAATGGGCTGAACAACTAAAGAT-CTTTCAGGAGCTGAATTCCGA 1836
Query 1749 GAATTCTAAATACAAGTTACTGTATGTAACACCAGAAAAAGTGGCAAAAAGTGAATCCCT 1808
| ||||||| |||||||| || ||||| ||||| |||||||| |||||||| || || ||
Sbjct 1837 GCATTCTAAGTACAAGTTGCTATATGTCACACCTGAAAAAGTAGCAAAAAGCGATTCTCT 1896
Query 1809 TATAAGGCACCTCGAAATCTTAAACTCCCGTAGTTTGCTTGCTCGATTTGTTATTGATGA 1868
| ||||||| || |||| |||||| || ||| ||||||||||||| ||||||||||||||
Sbjct 1897 TTTAAGGCATCTGGAAAACTTAAATTCTCGTGGTTTGCTTGCTCGGTTTGTTATTGATGA 1956
Query 1869 AGCTCATTGTGTGAGTCAGTGGGGGCATGACTTTCGACCAGACTACCAGGGTCTTGGTGT 1928
||||||||||||||| || ||||| |||||||||||||||||||||||| |||||||| |
Sbjct 1957 AGCTCATTGTGTGAGCCAATGGGGACATGACTTTCGACCAGACTACCAGAGTCTTGGTAT 2016
Query 1929 TCTGAAGCAGAAGTTTCCTAACATTCCCATGTTAGCTTTGACAGCTACTGCAACAACCAG 1988
|||||||||||| ||||| ||||||||| |||||||||| |||||||| |||||| ||||
Sbjct 2017 TCTGAAGCAGAAATTTCCCAACATTCCCGTGTTAGCTTTAACAGCTACAGCAACAGCCAG 2076
Query 1989 CGT-AAAGGAAGATGTTGTACAAGCTCTTGGGCTGGTAAACTGTGTTGTTTTCCGGCAAA 2047
|| ||| |||||||| |||||||| ||||| || || |||||||| || ||||||||||
Sbjct 2077 TGTGAAA-GAAGATGTGGTACAAGCCCTTGGCCTTGTTAACTGTGTCGTGTTCCGGCAAA 2135
Query 2048 GTTTTAATCGCCCTAATCTATGGTATTCTGTTGTTCCCAAGACGAATAAGTGTCTGGAAG 2107
|||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 2136 GTTTTAATCGTCCAAATCTATGGTATTCTGTTGTTCCCAAGACAAAAAAGTGTCTGGAAG 2195
Query 2108 ATATTGACAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTGTCTTT 2167
| || ||||| ||||| |||||||||||||||||| ||||| || || ||||||||||
Sbjct 2196 ACATCGACAAATTTATTAAGGAAAACCATTTTGATGAGTGTGGAATTATATATTGTCTTT 2255
Query 2168 CAAGAATGGACTGCGAAAAAGTCACGGAAATGTTGCGGGCGTTTGGCCATAAAGCGGCCT 2227
||||||||||||||||||||||| | ||| ||||| || |||||| |||||||| || |
Sbjct 2256 CAAGAATGGACTGCGAAAAAGTCTCTGAACGGTTGCAGGAGTTTGGTCATAAAGCAGCAT 2315
Query 2228 TCTACCATGGCAGTATGGATCCTG-GTAAACGTGCCTTTGTACAGAAACAATGGAGCAAG 2286
||||||||||||||||||| |||| | || ||||||||| |||||| |||||||||||||
Sbjct 2316 TCTACCATGGCAGTATGGAGCCTGAGCAA-CGTGCCTTTATACAGACACAATGGAGCAAG 2374
Query 2287 GATGAAATCAATATAATATGTGCTACAGTGGCATTTGGAATGGGAATCAATAAGCCTGAT 2346
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2375 GACGAAATCAATATAATATGTGCTACTGTGGCATTTGGAATGGGAATCAACAAGCCTGAT 2434
Query 2347 GTTCGTTTTGTAATTCATCATTCTCTACCAAAGTCCATAGAAGGCTATCATCAGGAATGT 2406
|| || ||||| |||||||| || || |||||||| |||||||||||||||||||||||
Sbjct 2435 GTCCGCTTTGTTATTCATCACTCGCTCCCAAAGTCTATAGAAGGCTATCATCAGGAATGC 2494
Query 2407 GGTCGTGCTGGTAGAGACGGCCAGAGGTCATCATGTGTTTTGTATTACAGTTACA-CTGA 2465
||||||||||| || || |||||| ||||||| |||||||| |||||| |||| | ||
Sbjct 2495 GGTCGTGCTGGCAGGGATGGCCAGCGGTCATCTTGTGTTTTATATTACGGTTATGGC-GA 2553
Query 2466 TTATATTCGAGTGAAGCATATGATTAGCCAAGGAGGACTTGGCCAAGGCCAGATGAAAA- 2524
||||| ||||| |||||||||||||||||||||||| ||| |||| ||| ||| ||
Sbjct 2554 CTATATACGAGTTAAGCATATGATTAGCCAAGGAGGAGTTGACCAAAGCCCCATGGCAAC 2613
Query 2525 TGGGATATAATTGTAAAGCAAGTTCAGGGAGGATGCTCGAAACGAACACGGAAAACCTTC 2584
|||| |||||| || |||||||||||||||| | || ||||| || || ||||||||||
Sbjct 2614 TGGG-TATAATCGTGTAGCAAGTTCAGGGAGGTTACTTGAAACAAATACCGAAAACCTTC 2672
Query 2585 TCCGCATGGTTAGTTACTGTGAAAATGAGGTGGACTGTCGACGTTTCCTACAGCTAGTTC 2644
||||||||||||| ||||| |||||||||||||| || |||||||||||||| ||||| |
Sbjct 2673 TCCGCATGGTTAGATACTGCGAAAATGAGGTGGAATGCCGACGTTTCCTACAACTAGTGC 2732
Query 2645 ATTTGGGAGAAAAATTTGATTCAACAAACTGCaaaaaaaCATGTGATAATTGTTCCAGCA 2704
||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| ||| |
Sbjct 2733 ATTTGGGGGAAAAATTCGATTCCACAAACTGCAAAAAAACGTGTGATAATTGTTGCAGTA 2792
Query 2705 G-CAAAAGTTTGATTGACAAAGATGTAAC-TGTGATTGCAAGGCAACTGGTGGAACTGGT 2762
| || | ||||||||||||||||||| || | |||| ||||||||||||| ||||||||
Sbjct 2793 GTCAGA-GTTTGATTGACAAAGATGTCACCT-TGATCACAAGGCAACTGGTTGAACTGGT 2850
Query 2763 TAAGCTAACAGGAGAAAGGTTTTCGTCAGCTCATATTGTAGAAATCTACAGGGGATCCTT 2822
|||| |||||||||||||||||| |||||||||||| | ||| ||||||| || |||||
Sbjct 2851 GAAGCAAACAGGAGAAAGGTTTTCTTCAGCTCATATTCTTGAAGTCTACAGAGGTTCCTT 2910
Query 2823 AAACCAG-TCGGTCAAGAGAA-ACAGACAAGAGACTTTGCACCTCCACGGAGCAGGAAAG 2880
|||||| | |||||||| || ||||||| ||||||||||| |||| ||||| |||||
Sbjct 2911 AAACCAAAT-GGTCAAGA-AACACAGACATGAGACTTTGCAGTTCCATGGAGCTGGAAAA 2968
Query 2881 CATTTAGCTAAAAGTGAAGCCTCTCGTATTTTGCACTATCTTGTGACAGAGGATATTCTC 2940
|||||| | |||| ||||| ||||||||| ||||| ||||| || ||||||||||||||
Sbjct 2969 CATTTATCGAAAATTGAAGTCTCTCGTATCTTGCATTATCTCGTAACAGAGGATATTCTT 3028
Query 2941 GCAGAGGGTGTTAGAAAAAGTGATCTGTATGGATCTGTATCGTCGTTGCTGAAGGTGAAT 3000
| || | |||||| ||||||||| ||||||||||||| || |||||||| ||||||||
Sbjct 3029 GTGGAAGATGTTAGGAAAAGTGATATGTATGGATCTGTGTCATCGTTGCTCCAGGTGAAT 3088
Query 3001 AGAT-CAAAGGCCGCC-TCGCTCTTATCTGGAGGCCAGAGTATAACGATGAGGTTTCCTT 3058
| | ||||||| || | || || |||||| |||||| |||| ||||| ||| ||||
Sbjct 3089 A-ACGCAAAGGCTACCATA-CTATTTTCTGGAAGCCAGACTATAGTGATGAAGTTCCCTT 3146
Query 3059 CGACCATAAAAGCGTCAAAGCCGAGCAAATC------CA-C---AGCAAAAGTTCC---A 3105
| | |||||| | |||||| || ||| | || | |||||||| ||| |
Sbjct 3147 CTTCTGTAAAAGTATTAAAGCCAAGTAAA-CAGGGGGCAACCGCAGCAAAAGGTCCGCTA 3205
Query 3106 -C-T-A-A-A-GCAAACTACTCTTCCAATGGCAA-A-A-GCTGC-CC-C-ACAAGAT-TC 3152
| | | | | ||||| |||||||||| | ||| | | | ||| || | | ||||| |
Sbjct 3206 ACATCAGAGAAGCAAAGTACTCTTCCACTTACAACAGAAGATGCTCCTCCAAAAGATGT- 3264
Query 3153 GAATCTCCC--CCA-CATTTTGTTGACAGCCTTGAAAAAGCTTCGTTCTGATATTGTCAA 3209
||||||| | ||| ||| || |||||||||| ||||||||| | | | |||||||
Sbjct 3265 GAATCTCTCTGCCAACAT---GTACACAGCCTTGAGGAAGCTTCGTACAGCTCTTGTCAA 3321
Query 3210 AGAATCCTCAGATGGAGTCATGGCATATCATATATTCGGCAATGCGACGCTTGAACAGAT 3269
|||| || | ||||| ||||||||||||||||||||| |||| | |||||| | |||||
Sbjct 3322 AGAAGCCCCTGATGGTGTCATGGCATATCATATATTCATCAATTCAACGCTTCAGCAGAT 3381
Query 3270 AAGTAAACG-ACTTCCCAGAACCAAAGAGGAACTCCTTGATATCAATGGTCTAGGAAAAG 3328
||| | ||| | | |||||||||||||||||||||||||| |||||||| || || || |
Sbjct 3382 AAGCAGACGGA-TACCCAGAACCAAAGAGGAACTCCTTGAAATCAATGGCCTTGGGAAGG 3440
Query 3329 CCAAGGTGAGCAAATACGGAGATCGGTTATTGGAAACCATA 3369
|||| || ||||| ||||| |||| ||| |||||||| |||
Sbjct 3441 CCAAAGTAAGCAAGTACGGTGATCAGTTGTTGGAAACAATA 3481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 175182964956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5