BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907378

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60320.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) dom...   780    0.0  


> AT1G60320.1 | Symbols:  | Toll-Interleukin-Resistance (TIR) domain 
family protein | chr1:22235091-22235606 FORWARD LENGTH=516
Length=516

 Score =  780 bits (422),  Expect = 0.0
 Identities = 477/504 (95%), Gaps = 2/504 (0%)
 Strand=Plus/Plus

Query  1    ATGACAAAGAGTGTTAAGAAGATCCCGATGGTGACCATCTCTCGCTTCATGCAGCCTCCA  60
            ||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct  1    ATGACAAAGAGTGTTAAGAAGATCCCGATGGTGGCTATCTCTCGATTCATGCAGCCTCCA  60

Query  61   -AGGTTTCAGGACCAAGTTTTTATCAACTTCCGAGGAGAGGAAATTCGCTATAGCTTCCT  119
             | ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CA-GTTCCAGGACCAGGTGTTTATCAACTTCCGAGGAGAGGAAATTCGCTATAGCTTCCT  119

Query  120  CAGCCACCTTGTTGCCGCTTTTAAACTACACGGAATAAATTTCTTCATTGACAAAGACGA  179
            ||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||| ||
Sbjct  120  CAGCCACCTCGCTGCCGCTTTTGAACTACACGGAATAAACTTCTTCATTGACAAAGATGA  179

Query  180  ACAGAAGGGAAAAGACCTTAAGCACCTTTTCAAAAGGATCAAGGAGTCGCAGATTGCACT  239
            ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct  180  ACAGAAGGGAAAAGACCTTAAACACCTTTTCAAAAGGATCAAGCAGTCGCAGATTGCATT  239

Query  240  AGCAATCTTTTCCGAAAGATATGCGCAGTCCCGATGGTGCTTGAACGAACTGGCAAAGAT  299
            ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  240  AGCAATCTTTTCCGAAAGATATGCGGAGTCCCCATGGTGCTTGAACGAACTGGCAAAGAT  299

Query  300  GAAGAAACTTGCAAGGAAGGGCAAATTAAATGTGGTTCCAATTTTCTACAAGGTGAAGGT  359
            |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct  300  GAAGAAACTTGCAAAGAAGGGCAAATTAAATGTGGTTCCTATTTTCTACAAGGTGGAGGT  359

Query  360  AAATGATGTGAGACATCAAGAGGGAAAATTTGGTAGCAACTTTTGGAAGTTGGCAAAGAC  419
            ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  360  AAATGATGTGAGACACCAAGAGGGAAAATTTGGTAGTAACTTTTGGAAGTTGGCAAAGAT  419

Query  420  TTCTAGTGGTGAGGAAATCAAGAAGTGGAAGGAAGCTTTGGAGTTTTTCTCTAACAAGAT  479
            |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  420  TTCTAGTGGTGACGAGATCAAGAAGTGGAAGGAAGCTTTGGAGTTTTTCTCTAATAAGAT  479

Query  480  GGGCTTGACGTTATGTGGCAAGAG  503
            ||||||||||||||||||||||||
Sbjct  480  GGGCTTGACGTTATGTGGCAAGAG  503



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29939551612


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5