BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907391
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60400.1 | Symbols: | F-box/RNI-like superfamily protein | ... 536 7e-152
> AT1G60400.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:22254405-22255798 FORWARD LENGTH=1212
Length=1212
Score = 536 bits (290), Expect = 7e-152
Identities = 428/492 (87%), Gaps = 19/492 (4%)
Strand=Plus/Plus
Query 3 GGAATACCAACCTGCAAGCATTGTAGTACATAGTATTGGTCCCTATGCAAAGGTGA-ACA 61
|||||||||| ||| |||| |||||||||| ||||||||||||||||||||||| | ||
Sbjct 732 GGAATACCAATCTGAAAGCTTTGTAGTACACAGTATTGGTCCCTATGCAAAGGT-AGACG 790
Query 62 TCGATGTTATGTTTGAAGTTGACTATGAAGATCCACTGGCAATCA-CTATGATCCGCAGT 120
||||| || | ||||||||||| ||||||||||||||||| || | |||||||| | | |
Sbjct 791 TCGATATTTTCTTTGAAGTTGAGTATGAAGATCCACTGGCGAT-ATCTATGATCAGAAAT 849
Query 121 TTTCTCATCGCGATATCCAAAGCCCGTGAAATGACCATCTCAACTCGAACTTTAGAGCTC 180
||||||| || ||||||||||| |||||||||||||||||||| |||||| |||||| ||
Sbjct 850 TTTCTCACCGGGATATCCAAAGTCCGTGAAATGACCATCTCAAGTCGAACGTTAGAGGTC 909
Query 181 AT-CGACGGCTACCATTTGAAGGTGAAAG-AGTTGCCT-AAGTTTTCCAACTTGTCTCGC 237
|| || ||||| || | | |||||||| | || ||| || ||||||||||||||| ||
Sbjct 910 ATCCG-TGGCTATCACTCCATGGTGAAAGCA-TTACCTCAA-TTTTCCAACTTGTCTAGC 966
Query 238 CTAGATGCCTTGTTAGAC-AAGTCTTTTTGGGATCGT-TTACCAGGT-TTTCTTGGTTGT 294
| ||||| ||||||| | || || | |||||| | | |||||| || ||||||||||||
Sbjct 967 TTGGATGCTTTGTTAGTCGAA-TCATATTGGGAAC-TCTTACCA-GTCTTTCTTGGTTGT 1023
Query 295 TGCATCAATCTGAATTCATTCGTCCTGGAACTTGACGGCCATTCAGAGATAGAGGAGATT 354
||||||||||| |||||| ||||| |||||||||| |||| ||| |||||||||||| ||
Sbjct 1024 TGCATCAATCTAAATTCACTCGTCGTGGAACTTGATGGCCTTTCCGAGATAGAGGAGTTT 1083
Query 355 AAAGTTTCACCACTGCTTCAAGATGCCCTATCCGCTCGTGGGTTTGTTCAGCTGAAGACA 414
|||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct 1084 AAAGTTTCACCACTGCTTCAAGATTCCCTATCTGCTCGTGGGTTTGTTCAGCAGAAGACA 1143
Query 415 CCACTTTCAGTCACAAAGACATCAAGTGAAATGAGGAAAATAGCAGCATATTTTGTGAAG 474
||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1144 CCAGTTTCAGTCACAAAGACATCAAGTGAAA-G-G-AAAATAGCAGCATATTTTGTGAAG 1200
Query 475 AAAAGTGGCTAA 486
||||||||||||
Sbjct 1201 AAAAGTGGCTAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5