BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907392
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60750.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 549 2e-155
AT1G60730.3 | Symbols: | NAD(P)-linked oxidoreductase superfam... 351 6e-96
AT1G60680.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 231 8e-60
> AT1G60750.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22362293-22363854 REVERSE LENGTH=993
Length=993
Score = 549 bits (297), Expect = 2e-155
Identities = 325/339 (96%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 724 GGTCTACCAAGATTCCAACAGGAGAATCTAGACAACAACAAGATTCTCTACGAGAAAGTC 783
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 GGTTTACCAAGATTCCAACAGGAGAATCTAGAAAACAACAAGATTCTCTACGAGAAAGTC 714
Query 784 CAAGAGATGGCGACAAAGAAAAGCTGCACTCCTGCACAACTAGCTCTAGCATGGGTTCAC 843
|||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 715 CAAGCGATGGCGACAAAGAAAAGTTGCACTCCTGCACAACTAGCTCTAGCGTGGGTTCAC 774
Query 844 CACCAAGGAGATGATGTCTGTCCTATTCCAGGAACCTCCAAGATCCAAAACCTCAACCAG 903
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 775 CATCAAGGAGATGATGTATGTCCAATTCCAGGAACCTCCAAGATCCAAAACCTCAACCAA 834
Query 904 AACATTGGAGCTTTATCAGTGAAGCTCACTCCTGAAGAGATGGTTGAGCTTGAAGCCATT 963
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AACATTGGAGCTTTATCCGTGAAGCTCACTCCTGAAGAGATGGTTGAGCTTGAAGCCATT 894
Query 964 GCTCGACCGGATTTCGTGAAAGGTGAACGATATGACAACAACATGGTTACTTACAAAGAC 1023
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 895 GCTCAACCGGATTTCGTGAAAGGTGAACGGTATGACAACAACATGGTTACTTACAAAGAC 954
Query 1024 TCAGAGACTCCACCATTGTCTTCTTGGAAAGAAAAATAA 1062
||||||||||||||||||||||||||||||| || ||||
Sbjct 955 TCAGAGACTCCACCATTGTCTTCTTGGAAAGCAAGATAA 993
Score = 512 bits (277), Expect = 2e-144
Identities = 326/349 (93%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 1 ATGGGTCTCTCCGCCTTCTACGGTGCTCCGACACCTGAGACTAACGCCGTGGCTCTCCTC 60
||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 82 ATGGGTCTCTCCGACTTTTACGGTGCTCCGACACCTGAGACTAACGCCGTCGCTCTCCTC 141
Query 61 CGTCACGCCATTAACGCCGGCGTTACA-TTCTTGGATACTTCCGACATCTACGGTCCCGA 119
||||||||||| ||||| || || ||| ||| | ||||| ||||||||||||||||||||
Sbjct 142 CGTCACGCCATCAACGCTGGGGTCACATTTC-TCGATACCTCCGACATCTACGGTCCCGA 200
Query 120 GACAAACGAGCTGCTTCTTGGAAAGGCTTTGAAAGATGGGTTGAGGGATAAAGTGGAATT 179
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 201 GACAAACGAGCTGCTTCTTGGAAAGGCTTTGAAAGATGGTTTGAGAGATAAAGTGGAATT 260
Query 180 AGCGACAAAATTTGGGATCACTGCTTCTGAAGATGGAAAATTTGGTTTCAGGGGAGATCC 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AGCGACAAAGTTTGGGATCACTGCTTCTGAAGATGGAAAATTTGGTTTCAGGGGAGATCC 320
Query 240 AGAGTATGTGAG--T-GCTTGTGAAGCAAGCTTAAGGCGTATTGGTGTTACCTCCATTGA 296
||||||||| || | ||||||||||||||||||| |||| ||||||| |||| ||||||
Sbjct 321 AGAGTATGTAAGGATTGCTTGTGAAGCAAGCTTAAAGCGTCTTGGTGTAACCTGCATTGA 380
Query 297 TCTTTATTACCAGCATCGAATTAATACCACTCTGCCCATCGAAATCACG 345
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 381 TCTTTATTACCAGCATCGAATTGATACCACTCTGCCCATCGAAATCACG 429
Score = 278 bits (150), Expect = 1e-73
Identities = 166/174 (95%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 379 ATTGGAGAGCTGAAGAAGCTAGTGGAAGAAGGGAAAATAAAGTATATCGGTTTGTCAGAA 438
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 430 ATTGGAGAGCTGAAGAAGCTAGTTGAAGAAGGCAAAATAAAGTACATCGGTTTGTCAGAA 489
Query 439 GCTTCAGCTTCAACTATCAGAAGAGCACACGCTGTTCATCCGATAACCGCTGTGCAAATA 498
||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 490 GCTTCGGCTTCAACTATAAGAAGAGCACATGCTGTTCACCCGATAACCGCTGTGCAAATA 549
Query 499 GAATGGTCTTTATGGTCGAGAGACGTGGAAGAAGATATCATTCCAACCTGCAGG 552
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GAATGGTCCTTATGGTCGAGAGACGTGGAAGAAGATATCATTCCAACCTGCAGG 603
> AT1G60730.3 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22358231-22360184 REVERSE LENGTH=1296
Length=1296
Score = 351 bits (190), Expect = 6e-96
Identities = 466/591 (79%), Gaps = 51/591 (9%)
Strand=Plus/Plus
Query 1 ATGGGTCTCTCCGCCTTCTACGGTGCTCCGACA-CCTGAGA-CTAACGCCGTGGCTCTCC 58
||||||||||| || ||||||||| |||| | | || || | | || || | ||||||
Sbjct 181 ATGGGTCTCTCTGCTTTCTACGGTACTCCCA-AGCCGGAAACCGAA-GCTATCGCTCTCA 238
Query 59 TCCGTCACGCCATTAACGCCGGCGTTACATT-CTTGGATACTTCCGACATCTACGGTCCC 117
||| ||||||||| || ||||||| || || ||| || || ||||| |||||||||||
Sbjct 239 TCCACCACGCCATTCACTCCGGCGTCACTTTCCTT-GACACCTCCGATATCTACGGTCCT 297
Query 118 GAGACAAACGAGCTGCTTCTTGGAAAGGCTTTGAAAGATGGGTTGAGGGATAAAGTGGAA 177
||||| |||||||| || || | |||||| | || |||||| |||| || |||||||||
Sbjct 298 GAGACCAACGAGCTTCTCCTCAGCAAGGCTCTCAAGGATGGGGTGAGAGAAAAAGTGGAA 357
Query 178 -TTAGCGACAAAATTTGGGATCACTGCTTCTGAAGATGGAAAATTTG-GTTTCAGGGGAG 235
|| ||||| |||| ||| |||| | | || ||| || ||| | | |||| | |||||
Sbjct 358 CTT-GCGACCAAATATGGAATCA--G-GTATGCAGAGGGGAAAGTAGAGTTT-AAGGGAG 412
Query 236 ATCCAGAGTATGT--GAG-TGCTTGTGAAGCAAGCTTAAGGCGTA-TTGGTGTTACCTCC 291
|||| | ||||| ||| ||| ||||| || || |||| ||| | | | |||| ||| |
Sbjct 413 ATCCTGCTTATGTAAGAGCTGCGTGTGAGGCTAGTTTAATGCG-AGTAGATGTTGCCTGC 471
Query 292 ATTGATCTTTATTACCAGCATCGAATTAATACCACTC-TG-CCC-ATCGAAATCA--C-- 344
|||||||| ||||| |||||||||||| || |||| || ||| |||||||||| |
Sbjct 472 ATTGATCTCTATTATCAGCATCGAATTGAT---ACTCGTGTCCCTATCGAAATCACTCTT 528
Query 345 GGT-ATG--G---C--T-TCT--TG--CT--T-TTA--ATCT--GTTTCAA--TGT-ATT 381
| ||| | | | ||| || | | ||| |||| || || | | |||
Sbjct 529 ATTCATGAAGAACCATTGTCTGGTGAAATGATCTTATCATCTCCCTTAGAATTTTTCATT 588
Query 382 GGAGAGCTGAAGAAGCTAGTGGAAGAAGGGAAAATAAAGTATATCGGTTTGTCAGAAGCT 441
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 589 GGAGAGCTGAAGAAGCTAGTTGAAGAAGGTAAAATAAAGTATATCGGTTTGTCTGAAGCT 648
Query 442 TCAGCTTCAACTATCAGAAGAGCACACGCTGTTCATCCGATAACCGCTGTGCAAATAGAA 501
|||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 649 TCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACCCGATAACCGCTCTGCAAATAGAA 708
Query 502 TGGTCTTTATGGTCGAGAGACGTGGAAGAAGATATCATTCCAACCTGCAGG 552
||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 709 TGGTCCTTATGGTCGAGAGACGTGGAAGAAGATATAATTCCAACCTGCAGG 759
Score = 270 bits (146), Expect = 2e-71
Identities = 278/339 (82%), Gaps = 20/339 (6%)
Strand=Plus/Plus
Query 726 TCTACCAAGATTCCAACAGGAGAATC-TAGACAACAACAAGATTCTCTACGAGAAAG-TC 783
||||||||||||||||||||| || | ||||| ||||||||||||||| ||||| | |
Sbjct 864 TCTACCAAGATTCCAACAGGA-AAACTTAGACCACAACAAGATTCTCTTTGAGAAGGTTT 922
Query 784 CAAG-AGATGGC-GACAAAGAAAAGCTGCACTCCTGCACAACTAGCTCTAGCATGGGTTC 841
| | | ||| | || |||||| | |||||||||||||||||||| || ||||||||||
Sbjct 923 C-TGCA-ATGTCTGA-GAAGAAAGGATGCACTCCTGCACAACTAGCCCTTGCATGGGTTC 979
Query 842 ACCACCAAGGAGATGATGTCTGTCCTATTCCAGGAACCTCCAAGATCCAAAACCTCAACC 901
| ||||| ||||||||||| || || || ||||||||| | ||||| ||||||||||||
Sbjct 980 ATCACCAGGGAGATGATGTTTGCCCCATCCCAGGAACCACTAAGATTGAAAACCTCAACC 1039
Query 902 AGAACATTGGAGCTTTATCAGTGAAGCTCACTCCTGAAGAGATGGT-TGAGCTTGAAGCC 960
||||||||||||||||||||||||| || ||||| ||||||||| | |||||| ||| ||
Sbjct 1040 AGAACATTGGAGCTTTATCAGTGAAACTTACTCCCGAAGAGATG-TCTGAGCTCGAATCC 1098
Query 961 ATTGCTCGACC-GGATTTCGTGAAAGGTGAACGAT--ATGA-CAACAACATGGTTAC-TT 1015
|||| | ||| || ||| |||||||| ||| ||| || | || | | || || ||
Sbjct 1099 CTTGCACAACCAGGTTTT-GTGAAAGGAGAAAGATCCATTAGCATC--C-TGACCACGTT 1154
Query 1016 ACAAAGACTCAGAGACTCCACCATTGTCTTCTTGGAAAG 1054
|||| |||| ||||||||||||||||||||||||||||
Sbjct 1155 -CAAAAACTCTGAGACTCCACCATTGTCTTCTTGGAAAG 1192
> AT1G60680.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22347622-22349297 REVERSE LENGTH=1304
Length=1304
Score = 231 bits (125), Expect = 8e-60
Identities = 156/171 (91%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 383 GAGAGCTGAAGAAGCTAGTGGAAGAAGGG-AAAATAAAGTATATCGGTTTGTCAGAAGCT 441
|||| |||||||||||||| |||| |||| || ||||||||||| ||| |||||||||||
Sbjct 492 GAGAACTGAAGAAGCTAGTTGAAG-AGGGTAAGATAAAGTATATTGGTCTGTCAGAAGCT 550
Query 442 TCAGCTTCAACTATCAGAAGAGCACACGCTGTTCATCCGATAACCGCTGTGCAAATAGAA 501
|||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 551 TCAGCTTCAACTATCAGAAGAGCACATGCTGTTCACCCGATAACTGCGGTGCAAATAGAA 610
Query 502 TGGTCTTTATGGTCGAGAGACGTGGAAGAAGATATCATTCCAACCTGCAGG 552
||||| |||||||||||||||| |||||||||||||||||| | |||||||
Sbjct 611 TGGTCCTTATGGTCGAGAGACGCGGAAGAAGATATCATTCCTATCTGCAGG 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5